Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03348 ATGCTTCCCATCACCTGCATTCTTTTAATGTACCTTCTCCTCTCCTATCTCTCACCCCCAATCAAAGCCAAAGCTGTCTCCAACCTCACCCTACCCCACCAACACCCTTACCCTGAAGCTGTGGTTTACGAAGTTCAACGGAAAATCAATGCTTCACTCTCTAGAAGACAACTCCTCTCAAAGGACCAAGCTTCATGCCTCACCGGAAACCCGGTGGATGATTGCTGGCGGTGCGACCAGAACTGGACGGCGAACCGTCAAAAGCTGGCGGATTGTGGCATCGGGTTCGGCGGTGATGCCATCGGCGGAAAAGGCGGCCAGATCTACATCGTAACCGATTCCTCCGACAATGACCCGGCGAACCCCGTTCCAGGAACACTCCGTCACGCCGTTATCCAAGACGAACCGTTATGGATCGTTTTCGCCGCCGACATGACCATAACCCTGAAGCACGAGCTCATTTTCAACAGTTTTAAAACCGTTGACGGTCGCGGCGCTAAAGTCGACGTCACCGGTCATGGTTGCATAACGCTCCAGTATGTGTCCAACGTGATCATTCATAACATCCACGTGCATCACTGTCGCCCCTCCGGTAACACCAACATACGCGCCAGTCCAACGCATGTAGGGTGGAGGGGAAAATCGGACGGTGATGGGATATCCATCTTCAGCTCCCGGAAGATCTGGATCGACCATTGCTCACTCTCTTATTGTGCGGACGGCTTGATCGATGCCATCATGGGGTCCACTGGGATAACCATCTCTAACAACCATTTCGCGCACCATGACGAGGTCATGCTCCTTGGTCACACCGATGATTACTTGCCCGACAGAGGCATGCAGATTACCATAGCCTTCAACCATTTCGGTGAAGGACTCATCCAGCGTATGCCACGTTGCAGACTTGGTTACATACACGTGGTCAACAACGATTTCACCCAGTGGGAGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATTAACAGCCAGGGTAACCGTTACACTGCTCCCTCCGATCCTAATGCCAAAGAGGTGACAAAGCGCGTGGAAACGGATGAGAGGCAGTGGAATGATTGGAATTGGAGGACAGAGGGGGACATAATGGTAAATGGAGCATTCTTTGTGCCCTCAGGTGCAGGGCTCAGTGCACAGTACGCACAGGCTACAAGTGCGCAACCTAAATCCGCCGCGCAAATTGACCAGCTCACCATGTATTCCGGTGTCTTCGGCGATCCAAGGGATAATGGGGATCTATATCCCGGTTTCAACGGAGGTGGGACCGTGACCGGAGCCACCAGCAAAGGTAACAATGCGGGGTCCACCGGGAGTAACGATGGGGACTTCTTCGGGATGATATTCGGAGGTAGCAGCAGCCAAGCAGCACCGCCATCATCCTCTTCATCTATTGTATTTGTTTCAACCTTTTTGTCTCTTTTAATTTTTTTCATTTTGGACACTACCAACAACCATGCTATTCTATTATCATTACTATGA 1497 0.5164 MLPITCILLMYLLLSYLSPPIKAKAVSNLTLPHQHPYPEAVVYEVQRKINASLSRRQLLSKDQASCLTGNPVDDCWRCDQNWTANRQKLADCGIGFGGDAIGGKGGQIYIVTDSSDNDPANPVPGTLRHAVIQDEPLWIVFAADMTITLKHELIFNSFKTVDGRGAKVDVTGHGCITLQYVSNVIIHNIHVHHCRPSGNTNIRASPTHVGWRGKSDGDGISIFSSRKIWIDHCSLSYCADGLIDAIMGSTGITISNNHFAHHDEVMLLGHTDDYLPDRGMQITIAFNHFGEGLIQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVETDERQWNDWNWRTEGDIMVNGAFFVPSGAGLSAQYAQATSAQPKSAAQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSKGNNAGSTGSNDGDFFGMIFGGSSSQAAPPSSSSSIVFVSTFLSLLIFFILDTTNNHAILLSLL* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03348 498 PANTHER PECTATE LYASE 18-RELATED 33 410 IPR045032 GO:0030570
Rops6g03348 498 Gene3D - 69 411 IPR012334 -
Rops6g03348 498 FunFam Pectate lyase 69 411 - -
Rops6g03348 498 SUPERFAMILY Pectin lyase-like 70 399 IPR011050 -
Rops6g03348 498 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Rops6g03348 498 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Rops6g03348 498 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Rops6g03348 498 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Rops6g03348 498 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
Rops6g03348 498 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Rops6g03348 498 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Rops6g03348 498 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Rops6g03348 498 Pfam Pectate lyase 152 333 IPR002022 -
Rops6g03348 498 SMART amb_all 144 341 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03348 Rops-Chr6 57955026 57960208 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03348 1 487 Polysaccharide Lyase AT3G53190 62.195 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03348 K01728 - gmx:100808438 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03348 6 57955026 57960208 Rops6g03348 6 57955026 57960208 ECH