Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03340 ATGGCGGTTGGGGGAGGAGCAGGTTCCATAGGTGTTCATGGTTGGGGAGACATGAAGAGTCTCACCGTCCAATTCATCACCGGTCGATGGTTCTTGGTCTTTGCCTCCTTTCTAATCATGGCAGCCGCCGGAGCCACCTACATGTTTGGCCTCTACTCCAGTGACATCAAAGACACTCTTGGCTATGACCAAACCACTCTCAACCTCCTCAGTTTTTTCAAAGACTTTGGTAGCAACGTTGGTGTTCTCTCAGGCCTCATCAACGAGATCTCTCCACCTTGGGTGGTACTAACCATTGGTGCAGTACTTAACTTCTTTGGTTACTTCATGATATGGCTATCAGTAACTAAAAAAATAGCCAGACCCCAAGTGTGGCAGATGTGTCTCTACATCTGCATAGGTGCTAACTCTCAGTCCTTTGCCAACACTGGTTCTCTTGTCACTTGTGTCAAGAACTTTCCAGAAAGTCGCGGGGCTGTGTTAGGCATCCTCAAAGGCTATGTGGGTCTTAGTGGTGCAATCATAACACAACTTTACAGTGCTATTTACTATGATGACACAAAGGCTTTGATTTTGTTCATAGGTTGGCTTCCAGCTGCTATATCCCTTGTTTTCCTTAGAACCATTCGATACATGAAGCCAGTTAGGAAACCTAATGAACTCAAGGTTTTCTACAACTTTTTGTATATTTCACTTGGCCTTGCTGGGTTTCTATTGGTCATGATCATAATACAGAAAAGGGTCAACTTCACAAGGAGTGAATATGATTTGAGTGCTGCTATGGTTGTTTTCTTGCTCTTCCTTCCACTTGTTGTTGTTTTCATTGAAGAATATAAGATCTGGCAGAGTAAAAAGTTTGCATTGGTTGATCCCTCCCCGGTAAGAATAGTAACCGAGGGTGAAAAAGTCAACCCGAGTGATGCTACTAATGGTAACTCAGTTTCAGCACCAAAAATGAAGGAAAGGGTTTCCAATGAAACTGAAGAAACTAAATGGTGGCAAAATGTGTTTAGTCCACCACCTAGAGGTGAGGACTATACCATACTTCAAGCCCTTTTCAGCATAGACATGTTGATCCTATTTGTGGCTTGTATTTGTGGTATTGGTGGCACTTTGACTGCAATAGATAATTTGGGTCAGATAGGAGCCTCACTTAGATACCCAAAGAAGAGCATAAGCACTTTTGTGTCCCTAGTAAGCATTTGGAATTATCTAGGACGTGTTTTCTCTGGATTTGTTTCTGAACATTTTCTAACAAAGTACAAATTCCCTCGTCCTCTTATGCTTACTTTGACCCTGCTCTTATCATGTGTTGGTCACCTTTTGATAGCATTTGGTGTGCCAAATGGTCTCTATCTGGCTTCCGTGATTATTGGGTTTTGTTTTGGTGCACAGTGGCCTTTACTTTTTGCCATTATATCCGAGCTTTTTGGACTTAAATACTATGCAACTTTGTACAACTTTGGAAGTGCAGCAAGTCCACTTGGGTTATATGTGCTAAATGTGAAAATCACTGGGCATCTTTATGACAAAGAAGCTAAGAAACAATTGGCAGCATTGGGGTTACAAAGAAAGACAGGGGAGGAATTGAACTGTGTTGGGGTCAATTGCTTCAAGCTATCCTTCATTATTATCACAGTTGGAACCTTTGTTGGTGTCCTTGTTTCAATCATTTTGGTGGCTAGGACAAGAAACTTTTACAAAGGTGACATATACAAGAGGTACAGGGAAGAGGCTAAGGTGTCAGAAACTGAAATGAAGGAGGTGGAGAACGATGGCAACACAAGGGAAGATGCCAAAGTTGGTAAGCATGTGCTATCAACTTAG 1827 0.422 MAVGGGAGSIGVHGWGDMKSLTVQFITGRWFLVFASFLIMAAAGATYMFGLYSSDIKDTLGYDQTTLNLLSFFKDFGSNVGVLSGLINEISPPWVVLTIGAVLNFFGYFMIWLSVTKKIARPQVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGAVLGILKGYVGLSGAIITQLYSAIYYDDTKALILFIGWLPAAISLVFLRTIRYMKPVRKPNELKVFYNFLYISLGLAGFLLVMIIIQKRVNFTRSEYDLSAAMVVFLLFLPLVVVFIEEYKIWQSKKFALVDPSPVRIVTEGEKVNPSDATNGNSVSAPKMKERVSNETEETKWWQNVFSPPPRGEDYTILQALFSIDMLILFVACICGIGGTLTAIDNLGQIGASLRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHFLTKYKFPRPLMLTLTLLLSCVGHLLIAFGVPNGLYLASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSAASPLGLYVLNVKITGHLYDKEAKKQLAALGLQRKTGEELNCVGVNCFKLSFIIITVGTFVGVLVSIILVARTRNFYKGDIYKRYREEAKVSETEMKEVENDGNTREDAKVGKHVLST* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03340 608 SUPERFAMILY MFS general substrate transporter 28 566 IPR036259 -
Rops6g03340 608 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 30 573 - -
Rops6g03340 608 Pfam Nodulin-like 29 274 IPR010658 -
Rops6g03340 608 Coils Coil 572 592 - -
Rops6g03340 608 CDD MFS_Mch1p_like 28 553 - -
Rops6g03340 608 Gene3D MFS general substrate transporter like domains 348 567 IPR036259 -
Rops6g03340 608 MobiDBLite consensus disorder prediction 586 608 - -
Rops6g03340 608 FunFam Nodulin family protein 348 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03340 Rops-Chr6 57900951 57902963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03340 16 578 Nodulin-like Gene Family AT2G39210 70.515 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03340 - - pvu:PHAVU_007G024800g 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03340 6 57900951 57902963 Rops6g03340 6 57900951 57902963 ECH