Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03339 ATGGCCGGGAAAGAAGAGAATCGAATATTTGTTGGAGGGTTATCATGGGACGTTACGGAGCGTCAACTCGAACATGCCTTTGCCCGTTACGGCAAAATTCTCGAATGTCAGATCATGATGGAAAGAGATACAGGCCGTCCACGTGGATTTGGGTTTATTACATTTGCAGACCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGATCGAATCATCTCAGTCAATAAGGCACAGCCCAAGATGGGGGGTGATGATGTAGACCCAGGTTACAGAGGAGGTGGCTACTCATCAGGCGGTAGGGGAAGGAGCTATGGGGCTGGAGATAGGATAGGACAGGATGACTGTTTCAAATGTGGGCGTCCAGGGCACTGGGCCCGAGATTGTCCTGTGGCTGGAGGTGGAGGTGGTCGGGGTCGGGGTGGTAGTTCATTTTCTTCACGTCCTAGGTTTGGAGGTGCTGGGGATCGCCTTGGTGGTGAACGTGATCGGTACGTTGATGATCGTTATGATGCTGGACGTTATGGAGATAGGGATCGTTTTGACAACCGGGACTACAAATATGGTGGCCGTGATCGCTATGCTAGTGACAGGTATGCAACTAGTGGAGACCGATTTGCAGGTGATCGATATGGCAGTGGCTCAGATTACCCACAAAATGGTTATGGCAAGGAAAGAGGCTATGATCGGTATGGTGGTCCACGAGGCGGTGCTGATAAGTATGGAAGTGGAATGGCAGCTCGAGATGAAGGAAGGAGTTATAGGGGTAGGCCTGGTCCATATGACCGCCCTAGCAGGGGTGGTCGTCCATCATCATTTGACCGCTACTGA 846 0.513 MAGKEENRIFVGGLSWDVTERQLEHAFARYGKILECQIMMERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNKAQPKMGGDDVDPGYRGGGYSSGGRGRSYGAGDRIGQDDCFKCGRPGHWARDCPVAGGGGGRGRGGSSFSSRPRFGGAGDRLGGERDRYVDDRYDAGRYGDRDRFDNRDYKYGGRDRYASDRYATSGDRFAGDRYGSGSDYPQNGYGKERGYDRYGGPRGGADKYGSGMAARDEGRSYRGRPGPYDRPSRGGRPSSFDRY* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03339 281 Pfam Zinc knuckle 121 135 IPR001878 GO:0003676|GO:0008270
Rops6g03339 281 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 273 - -
Rops6g03339 281 Gene3D - 117 145 - -
Rops6g03339 281 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Rops6g03339 281 Gene3D - 1 116 IPR012677 -
Rops6g03339 281 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Rops6g03339 281 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Rops6g03339 281 MobiDBLite consensus disorder prediction 137 281 - -
Rops6g03339 281 ProSiteProfiles Zinc finger CCHC-type profile. 121 135 IPR001878 GO:0003676|GO:0008270
Rops6g03339 281 SMART rrm1_1 8 81 IPR000504 GO:0003723
Rops6g03339 281 MobiDBLite consensus disorder prediction 160 204 - -
Rops6g03339 281 MobiDBLite consensus disorder prediction 84 110 - -
Rops6g03339 281 FunFam glycine-rich RNA-binding protein RZ1C 1 116 - -
Rops6g03339 281 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Rops6g03339 281 SUPERFAMILY Retrovirus zinc finger-like domains 102 140 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03339 Rops-Chr6 57864621 57869941 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03339 9 88 C2H2 Transcription Factor Family AT2G19380 43.750 1.49e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03339 - - gmx:100809519 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03339 6 57864621 57869941 Rops6g03339 6 57864621 57869941 ECH