Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03318 ATGAAGGTTTTCGTTAAGACTCTGAAAGGCACTCACTTCGAAATCGAAGTGAATCCCCAAGACTCGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCGGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTTAAGGATGGTACTACCTTGGAGGAAAATAAAGTCGCTGAAAATAGTTTCATCGTGATTATGCTTTCGAAGAGTAAGAATTCATCCGGTGAAGGATCTACTACTTCAACTGCACCTTCAGCGAAGGCCCCACAGACAAGTGCAGCTCCTACTTCAACCCCCCCAGTGTCAGTATCACCTCAAGCTCCTGCTTCAACTGGCGCATCGCCTGCATCTGTTACTGCACCTGCACCTGCACCTGCTCCAGCTCCAGCTGCTGCTCCAGCTCCAGCTGCTGCTCCTGCTCCTGCTCCTGTATCTACAGGCACTGCTGTGGCCGATTCTGATGTCTATGGGCAGGCAGCATCGAATCTGGTTGCTGGTAGCAACTTGGAGGGAACAATTCAGCAAATCGTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGCATCCCTGAGCAAGCTGAAGCTCCACTTGTGGCCCCAGCACCTACAGGTGCACAACCTGAAAATCCTCCAGTTGCAGCTCCACAAGCACCACCACCAGCTCCTGTTACCTCAGGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGCCTCCCCAATGTTGGTGCTGGTGCTGCTGGTGCTGGCTCTTTAGATTTTCTACGCAACAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAGGAGCTTGGCAAGCAAAATCCTCATCTTATGAGATTAATTCGAGATCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGCGAAGGGAACATATTGGGGCAGCTAGCTGCTGGCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGACTTGAAGCAATGGGTTTTGATCGTGCGATTGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTATCTTTTAGATCACATGCATGAGTTCGAGGAACAATAG 1227 0.4898 MKVFVKTLKGTHFEIEVNPQDSVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKNSSGEGSTTSTAPSAKAPQTSAAPTSTPPVSVSPQAPASTGASPASVTAPAPAPAPAPAAAPAPAAAPAPAPVSTGTAVADSDVYGQAASNLVAGSNLEGTIQQIVDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAPAPTGAQPENPPVAAPQAPPPAPVTSGGPNANPLDLFPQGLPNVGAGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPVEGGEGNILGQLAAGMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03318 408 FunFam UV excision repair protein RAD23 1 80 - -
Rops6g03318 408 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Rops6g03318 408 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Rops6g03318 408 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 396 - -
Rops6g03318 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 174 217 IPR015940 -
Rops6g03318 408 MobiDBLite consensus disorder prediction 78 155 - -
Rops6g03318 408 SMART ubq_7 1 75 IPR000626 GO:0005515
Rops6g03318 408 Gene3D - 355 402 - -
Rops6g03318 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 360 401 IPR015940 -
Rops6g03318 408 CDD Ubl_Rad23 1 74 - -
Rops6g03318 408 Gene3D - 169 219 - -
Rops6g03318 408 PRINTS DNA repair protein Rad23 signature 308 330 IPR004806 GO:0006289
Rops6g03318 408 PRINTS DNA repair protein Rad23 signature 389 404 IPR004806 GO:0006289
Rops6g03318 408 PRINTS DNA repair protein Rad23 signature 374 388 IPR004806 GO:0006289
Rops6g03318 408 PRINTS DNA repair protein Rad23 signature 357 373 IPR004806 GO:0006289
Rops6g03318 408 Pfam XPC-binding domain 282 337 IPR015360 GO:0003684|GO:0006289|GO:0043161
Rops6g03318 408 SMART uba_6 176 216 IPR015940 -
Rops6g03318 408 SMART uba_6 363 400 IPR015940 -
Rops6g03318 408 SUPERFAMILY UBA-like 344 405 IPR009060 GO:0005515
Rops6g03318 408 NCBIfam UV excision repair protein Rad23 1 406 IPR004806 GO:0006289
Rops6g03318 408 SMART CBM 280 323 IPR006636 -
Rops6g03318 408 Pfam UBA/TS-N domain 363 398 IPR015940 -
Rops6g03318 408 Pfam UBA/TS-N domain 179 214 IPR015940 -
Rops6g03318 408 MobiDBLite consensus disorder prediction 232 255 - -
Rops6g03318 408 MobiDBLite consensus disorder prediction 127 147 - -
Rops6g03318 408 CDD UBA1_Rad23_plant 170 219 - -
Rops6g03318 408 MobiDBLite consensus disorder prediction 78 124 - -
Rops6g03318 408 SUPERFAMILY UBA-like 173 224 IPR009060 GO:0005515
Rops6g03318 408 FunFam UV excision repair protein RAD23 B 273 338 - -
Rops6g03318 408 FunFam UV excision repair protein RAD23 homolog 354 402 - -
Rops6g03318 408 SUPERFAMILY XPC-binding domain 279 344 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops6g03318 408 FunFam UV excision repair protein RAD23 homolog 169 219 - -
Rops6g03318 408 MobiDBLite consensus disorder prediction 228 257 - -
Rops6g03318 408 Gene3D - 273 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops6g03318 408 Gene3D - 1 80 - -
Rops6g03318 408 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Rops6g03318 408 CDD UBA2_RAD23_plant 359 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03318 Rops-Chr6 57653610 57657516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03318 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 8.49e-09 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03318 K10839 - gmx:100814162 597.816