Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03309 ATGAAACTTAGCTGCAATGGGTGTCGCATACTCCGCAAAGGTTGCAGTGACAACTGCGTCCTCAGGCCCTGTCTTGATTGGATCAATTCCCCTGAGTCTCAAGCCAACGCCACCCTCTTCCTTGCCAAATTCTATGGCCGCACTGGCTTGCTCAACCTTCTCAACGCTGCTCCTCAAAACTTTGGCCCAGCTGTGTTCAGGTCACTGTTGTATGAGGCTTGTGGTAGATTAGTGAATCCCACTTATGGGTCACTGGGTTTGTTCTGGACCGGGGAGTGGGTCCGATGCGAAGCTGCAGTTGACGCCGTGCTGACTGGGTCCAAGATCAATGACGTGGCAGCTTCTGATTGGAAGGCATCAATGAAACTTGGTAGTGATCATGTTTTCCCAGCCTGTGACGTACGCCACGTGCCTAGAGACAGCATCGTGGACGACTTGAGAGAGAAAACCCGGTTCAAGAGAACCGGGAAAGTTATCAAACCCAAACCGCGAGTGGGTTCAGTTGACTCTGCTGCTTTGTGGAAAACCGGTTGGGAGAGTGAGAGTGTGGAAACCGTGGAGGCTTCGCTGATGAGCCAGGACGAACCGAACCGGTCCGGTGAAACCGGGTTGAACTTGGAACTCACTCTTGGCTTTGGTTGCCAAACAACCGGTGGCAAGAAGAGACATTATTAA 675 0.5215 MKLSCNGCRILRKGCSDNCVLRPCLDWINSPESQANATLFLAKFYGRTGLLNLLNAAPQNFGPAVFRSLLYEACGRLVNPTYGSLGLFWTGEWVRCEAAVDAVLTGSKINDVAASDWKASMKLGSDHVFPACDVRHVPRDSIVDDLREKTRFKRTGKVIKPKPRVGSVDSAALWKTGWESESVETVEASLMSQDEPNRSGETGLNLELTLGFGCQTTGGKKRHY* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03309 224 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Rops6g03309 224 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 208 - -
Rops6g03309 224 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03309 Rops-Chr6 57433651 57434577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03309 1 210 AS2 family AT3G02550 41.304 1.19e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops6g03309 LOB 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03309 - - gmx:100779034 341.658