Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03298 ATGTCCACAATTACAAAGAGAGAATTGGGTTCTAATGAAGAAAGTGAGCTGAGAAGAGGACCTTGGACTCTTGAAGAAGATAGCTTACTCATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTCAGATGGCTCAATTACTTAAAACCTGATATTAAGAGAGGGAACCTTACTCCACAAGAACAGCTGTTGATCCTTGAACTCCATTCTAAGTTGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATTAAGAACTATTGGAGAACAAGGGTACAGAAACAGGCAAGGCAACTGAACATTGAGTCTGGTAGCAAGAGATTCATTGATGCTGTTAAGTGTTTCTGGATGCCAAGATTGCTTCAAAAGATGGAACAGAACTCTTCTCCCAGCACTCACTCTTCCATGACAAACATGAATTTTGGAAATTCTGCAGAATCTTCAATGAGTTCAATGTCAACCAGCTTCAATATTCCTTCTATGTGTCCATCACCTGCTCCACAAAGTGAATTTATAGATGCTGCAAACCATGTAAGCACTATGTCCAGCCCCAACAATCTTTCCTCAGATTCCCTCCAATTTTCACAGTTAATGGAAATTTCAGAACAACCAAAAGGTCCTCCCAATGTGTTTGAGAATAATGTTTATAGCTATCCAATCCAGGATAACTGCTATATTGATACCAATAACTATGGCTTGGAAGGTCTAAACATGGATCCCCTTTCTACAATGGAAACTTATGACATTTCACAGTTTGATTTTCAGACTGAGGGGAGTGGCTGGATGTTAGACAACATGAGTGATACTTTATGGAACATGAATGCTATGTGA 906 0.4007 MSTITKRELGSNEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKLGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNSSPSTHSSMTNMNFGNSAESSMSSMSTSFNIPSMCPSPAPQSEFIDAANHVSTMSSPNNLSSDSLQFSQLMEISEQPKGPPNVFENNVYSYPIQDNCYIDTNNYGLEGLNMDPLSTMETYDISQFDFQTEGSGWMLDNMSDTLWNMNAM* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03298 301 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Rops6g03298 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Rops6g03298 301 Gene3D - 75 120 - -
Rops6g03298 301 Gene3D - 16 72 - -
Rops6g03298 301 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Rops6g03298 301 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Rops6g03298 301 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Rops6g03298 301 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 13 193 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops6g03298 301 CDD SANT 76 115 IPR001005 -
Rops6g03298 301 FunFam Myb transcription factor 19 71 - -
Rops6g03298 301 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Rops6g03298 301 SMART sant 18 68 IPR001005 -
Rops6g03298 301 SMART sant 71 119 IPR001005 -
Rops6g03298 301 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 34 43 IPR001345 GO:0003824
Rops6g03298 301 FunFam MYB transcription factor 75 117 - -
Rops6g03298 301 CDD SANT 21 66 IPR001005 -
Rops6g03298 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03298 Rops-Chr6 57115265 57116708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03298 14 157 MYB Transcription Factor Family AT1G68320 82.639 3.89e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g03298 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03298 K09422 - gmx:100780759 500.36