Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03258 ATGGTTGCCTCTAAAATTATCCTTACCAACGTGTCAAAGTTGCAGACTTTGGCCTTTCAAGGTTGTTCCATAAGAATATCACCAACCCTAAACCAGCTTACTAGCAAGAGTGATGCATGCAGTTTTGGAGCTGTGCTCATTGAGCTAATATCACCAAAGCCTGCTATCCACATGAGCAGGCACAAGGCTAAAGAAGGAAAGTGTCCACCTTCTTTTGATTGTGGAAATCTTGGCCAGATCAAATTCCCTTTCACAAACACACAACGCCCACAGTGCGGCATATTGGCTATACATGGCTGTGATGATAAGACTGCTGCTCCCAAAAGCATCCAACTAAGCAACACACCATCAAGACGGGTTTTTAATGTTTCATACGTGGAGGGTTATACCATAACGGTCACAGATGATGGTCAACGGAAGAATATACGAACCAAGAGTTGCAAAGCCTTCAACAATTTTACTCTTCCTCCCACCTCTCCTTTAGCTTCTTTCTACGGCAAATATAATATAACTATGTTCAGATGCAATCACTCCCTTAGTGTCGCCCACCTTCCCAATTTTTTTTACAACTATGCAAACTGTCCTGCTTATAATATCTACTATGCCTTTCCAAATACTATGAAACCTCCTGGTTTCGTGTGGCCAAGCTCTTTGGCACCGTGTTCAAAGGTTCAGGTTGCATTAAGAGACGTGCCTACTGAAGATCCCTTTGATTTTCTATCTCCTGAGATCTCCATTGAAGTTCAATTATCTGATGATTGCGCCAAGTGTATTCATCACGAAAGGGGCAGATGTCAACTTGACAGTCACGGAAATTTCTTTTGTGCTGAAGGGCATCAAAGTTTAGCGTGGAAGTTGGGAATTGGTATTGGACTCCCTGTCACTCTTATAATTGGGTTGTTGATCATATGGCACTGCAAACCAAGATGTGTTCCTGAATTCTACTCAAATCCATACCCAGAGAGTGGCAGTACTGTCTACTTTGGGGTCCCGGTCTTCTCCTATAAGGATCTTCAAGTAGCAACAAAAAATTTTGACCGTTCAAGAGAACTTGGAGAAGGAGGATTTGGAACTGTCTACCTTGGAAAACTCAAAGATGGACGTGAAGTTGCAGTGAAGCGCTTATATGAGCACAACTATAGGCGAGTAGAACAGTTCGTGAACGAAATCAAGATCCTCACCCGCTTGCGCCACAGAAATCTAGTGTCTCTCTATGGCTGCACTTCACGTCACGGCCGTGAACTATTGCTTGTATATGAATACATTTCAAATGGGACTGTGGCCAGTCATCTCCGTCGTGAATCAACAAATCCAGGCATTTTGGCATGGCCAATCCGAATGAAAGTTGCCATAGAGACCGCTACTGCTTTGGCTTATCTCCATGCTTCTGATATCATTCACCGTGATGTGAAAACAAACAACATTCTCCTTGACAACACTTTCTGTGTTAAAGTTGCAGATTTTGGACTCTCAAGACTGTTCCCTAATGATGTTACCCATGTTTCCACAGCTCCACAAGGGACCCCTGGTTATGTTGATCCTGAATATCATCAGTGCTACCAGCTTACAACCAAGAGTGATGTGTATAGCTTTGGGGTTGTACTTGTTGAGCTGATATCATCTATGCCTGCTGTTGATATGGCCAGGCATAAGGATGAGATTAACTTGGCTAATCTAGCCGTAAGGAAGATTCAAAAAAGTGCAATTGGTGAGTTGGTGGATCCTTCCCTTGGTTTTGAGTCAGATAGTGATGTGACAAGGAAAATAGTTTCGATAGCAGAATTGGCTTTTCAGTGCTTGCAAAGGGATAAGGAATTGAGACCCTCTATGGATGAGGTTTTAGAGGTGCTGAGGAGAATTGAAAGTGGGAAGGATGAGCCTGGACATGTAGAGGAAGTGATAGTTGGTGGGGCAGGGATGTCACATATTGAGGTGCAACCACCCTCACCAGATCATGATGAGGTGAAATTGTTGAGGAATATGAAATTAACTCGTTCGCCAAAGGCTGTGACAGATAAATGGGATAGTGACTCCACTACTCCTAATGTCAGTGGTCAATAG 2061 0.4328 MVASKIILTNVSKLQTLAFQGCSIRISPTLNQLTSKSDACSFGAVLIELISPKPAIHMSRHKAKEGKCPPSFDCGNLGQIKFPFTNTQRPQCGILAIHGCDDKTAAPKSIQLSNTPSRRVFNVSYVEGYTITVTDDGQRKNIRTKSCKAFNNFTLPPTSPLASFYGKYNITMFRCNHSLSVAHLPNFFYNYANCPAYNIYYAFPNTMKPPGFVWPSSLAPCSKVQVALRDVPTEDPFDFLSPEISIEVQLSDDCAKCIHHERGRCQLDSHGNFFCAEGHQSLAWKLGIGIGLPVTLIIGLLIIWHCKPRCVPEFYSNPYPESGSTVYFGVPVFSYKDLQVATKNFDRSRELGEGGFGTVYLGKLKDGREVAVKRLYEHNYRRVEQFVNEIKILTRLRHRNLVSLYGCTSRHGRELLLVYEYISNGTVASHLRRESTNPGILAWPIRMKVAIETATALAYLHASDIIHRDVKTNNILLDNTFCVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYHQCYQLTTKSDVYSFGVVLVELISSMPAVDMARHKDEINLANLAVRKIQKSAIGELVDPSLGFESDSDVTRKIVSIAELAFQCLQRDKELRPSMDEVLEVLRRIESGKDEPGHVEEVIVGGAGMSHIEVQPPSPDHDEVKLLRNMKLTRSPKAVTDKWDSDSTTPNVSGQ* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03258 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
Rops6g03258 686 SUPERFAMILY Protein kinase-like (PK-like) 323 621 IPR011009 -
Rops6g03258 686 MobiDBLite consensus disorder prediction 667 686 - -
Rops6g03258 686 SMART serkin_6 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03258 686 ProSiteProfiles Protein kinase domain profile. 345 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03258 686 FunFam Wall-associated receptor kinase-like 20 422 629 - -
Rops6g03258 686 ProSitePatterns Protein kinases ATP-binding region signature. 351 373 IPR017441 GO:0005524
Rops6g03258 686 Gene3D Transferase(Phosphotransferase) domain 1 422 629 - -
Rops6g03258 686 Gene3D Phosphorylase Kinase; domain 1 320 421 - -
Rops6g03258 686 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 65 679 IPR044652 GO:0004672
Rops6g03258 686 Pfam Protein kinase domain 346 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03258 686 FunFam receptor-like protein kinase FERONIA 318 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03258 Rops-Chr6 56550270 56564284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03258 72 685 Receptor kinase-like Gene Family AT1G25390 47.402 9.44e-174 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Rops6g03258 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03258 - - aprc:113871893 874.004