Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03247 ATGTCATCACACATCACTGAGATGGAGACATGGAGTGTGTGCGTGTGTGATTGGGCTGTGAAGGCCTGCTTCTACATCTTGTCCTGCAAAGTTCATTTGGCCATCATCAAAATGGTTTCAAGGTCATATAGTAACTTGTTAGATCTTACTTCCTGTGACTCCCCAACTTTTGGTCGAGAGAAGAAAAGGCTTCCTCGGGTGGCAACTTTTGCTGGAGTACTGTCTGAAGTAGATGATGAGACCAGCAACAGCGTTGGTTCTGATGCTCCCTCCTCCATCTCTCAAGAGAGGATGATCATTGTTGGTAACCAGCTTCCATTAAAGGCTCATAGAAAAGACAATGGCACATGGGAATTCACCTGGGATGAGGATTCACTTCTTTTACAGCTGAAAGATGGTCTTGGGGATGATATTGAAACTGTCTATATTGGTTGTCTTAAAGAAGAAATTGAGCCAAGTGAGCAAGATGATGTTGCTCAGTACTTGCTTGAAACTTTCAACTGTGTTCCCACGTTCCTCCCTCCTGAGCTTTTTAGTAAATTCTATCATGGATTCTGCAAACAACATCTATGGCCTTTATTTCACTACATGCTTCCACTGTCACCTGATCTTGGTGGTAGATTTGATAGGTCCCTTTGGCAAGCTTATGTTTCTGTGAACAAGATATTTGCAGATAAAGTGATGGAAGTCATTAGCCCTGATGATGACTTTGTGTGGGTTCATGACTACCACTTGATGGTTCTTCCAACATTTTTGAGAAAGAGATTTAACAGGGCGAGGCTAGGATTCTTCCTCCATAGTCCATTTCCTTCCTCTGAGATTTACCGAACCCTTCCTGTTAGGGATGAACTTCTTAGAGCTCTTCTGAATTCTGACCTTCTTGGGTTCCATACTTTTGATTATGCCAGGCATTTCCTCTCCTGTTGCAGTAGAATGCTTGGGATTTCATATCAATCCAAGCGGGGCTACATTGGTCTTGAGTACTATGGAAGAACTGTAAGCATTAAGATTCTTCCTGTTGGCATTCATATAGGTCAGATTCAATCAGTCATGAATCATCCTGAGACAGAAAGCAAGGTTGCTGAGTTACAAAAACAGTTCAGAGGTCAAACTGTGATGCTTGGGGTGGATGACATGGATATCTTCAAAGGAATCAGCTTAAAACTGTTGGCCATGGAACAATTGCTTTTACATCATCCTGATAAGAGGGGGGAAGTTGTTCTGGTCCAAATTGCAAACCCTGCTAGAGGCCGTGGAAAGGATGTACAGGAAGTACAGAGTGAAACCTATGCCACAGTGAAAAGGATAAATGATACATTTGGGAGGCCTGGATACACACCTGTAGTCTTGATTGATACACCACTTCAAAGTTATGAGCGAATTGCTTATTATATCGTTGCAGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCCTATGAGTATATCATTTGTAGACAAGGAAGTGAGAAGATAGATGAGATTTTAGGGATAAACCCATTAGCGCAAAAGAAGAGCATGCTTGTAGTGTCTGAGTTCATTGGGTGCTCTCCATCATTAAGTGGGGCAATTCGAGTGAATCCATGGAATATTGATGCTGTTGCTGAAGCTATGGATTCTGCACTAATGGTCTCTGAGTCTGAAAAACAGATGCGGCACGAGAAGCATTATAGGTATGTTAGTACGCATGACGTTGCATATTGGGCACGTAGCTTCTTGCAGGATCTGGAAAGGGCATGTAGAGATCATCTGAGGAGGAGATGCTGGGGAATTGGTTTTGGTTTAGGATTTCGAGTAATCGCTTTGGATCCAAACTTCAGGAAGCTATCCGTGGAACACATTGTTTCAGCTTATAAGAGGACCAAAAACCGAGCAATTCTTTTGGATTATGATGGTACTATGGTGCAGCCTGGATCAATTAATACAACACCTAATGCTGAAACTGTTGCCATCTTGAACAGCTTGTGCATGGACACCAAGAATCGCGTTTTCATTGTAAGTGGAAAGGAAAGAAAGACTCTTATTGAATGGTTTTCTTCTTGTGAAAAGCTGGGAATCGCTGCAGAGCATGGTTATTTTGTGAGGACAAATCATAATGCAGAATGGGAAACTTGTGTTTCTGTGCCCGATTTTGACTGGAAACAGATTGCTGAGCCAGTTATGCAGTTATATATGGAAACAACTGATGGTTCTAACATAGAGACCAAAGAGAGTGCTCTTGTATGGAGTTACGAGTATGCAGATCGAGATTTTGGTTCATGCCAGGCTAAGGAGCTTTTTGATCATCTGGAAAGTGTTCTTTCCAATGAGCCTGTTTCTGTTAAAAGTGGTCCGAACATTGTGGAAGTTAAACCTCAGGGTGTGAGCAAGGGCATTGTAGCAGAACGTATTCTCTTAACAATGCAACAAAAGGGAGTGATACCAGATTTTGTTCTATGCATTGGGGATGACAGATCAGATGAGGACATGTTTGAGGTAATAAGGAGTGCAAGGGCGTCACTATCACCTGTTGCCGAGGTGTTTCCTTGCACAGTTGGTCAGAAACCTAGCAAGGCCAAGTATTATTTGGAAGACACAAGTGAGATTTTGAGGATGTTGCAGGGCCTAGCCAATGCTTCTGATCAGTGTGCCAGAAGTTCTTCCCAGCCTTCTCATTAA 2670 0.4251 MSSHITEMETWSVCVCDWAVKACFYILSCKVHLAIIKMVSRSYSNLLDLTSCDSPTFGREKKRLPRVATFAGVLSEVDDETSNSVGSDAPSSISQERMIIVGNQLPLKAHRKDNGTWEFTWDEDSLLLQLKDGLGDDIETVYIGCLKEEIEPSEQDDVAQYLLETFNCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRARLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLLGFHTFDYARHFLSCCSRMLGISYQSKRGYIGLEYYGRTVSIKILPVGIHIGQIQSVMNHPETESKVAELQKQFRGQTVMLGVDDMDIFKGISLKLLAMEQLLLHHPDKRGEVVLVQIANPARGRGKDVQEVQSETYATVKRINDTFGRPGYTPVVLIDTPLQSYERIAYYIVAECCLVTAVRDGMNLIPYEYIICRQGSEKIDEILGINPLAQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDSALMVSESEKQMRHEKHYRYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKNRAILLDYDGTMVQPGSINTTPNAETVAILNSLCMDTKNRVFIVSGKERKTLIEWFSSCEKLGIAAEHGYFVRTNHNAEWETCVSVPDFDWKQIAEPVMQLYMETTDGSNIETKESALVWSYEYADRDFGSCQAKELFDHLESVLSNEPVSVKSGPNIVEVKPQGVSKGIVAERILLTMQQKGVIPDFVLCIGDDRSDEDMFEVIRSARASLSPVAEVFPCTVGQKPSKAKYYLEDTSEILRMLQGLANASDQCARSSSQPSH* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03247 889 FunFam Trehalose-6-phosphate synthase 2 711 790 - -
Rops6g03247 889 Gene3D - 627 740 IPR023214 -
Rops6g03247 889 Gene3D - 753 887 IPR023214 -
Rops6g03247 889 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 757 886 - -
Rops6g03247 889 Gene3D Glycogen Phosphorylase B; 350 565 - -
Rops6g03247 889 Gene3D Glycogen Phosphorylase B; 90 349 - -
Rops6g03247 889 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 90 348 - -
Rops6g03247 889 SUPERFAMILY HAD-like 628 874 IPR036412 -
Rops6g03247 889 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 80 875 IPR001830 GO:0003824|GO:0005992
Rops6g03247 889 FunFam Alpha,alpha-trehalose-phosphate synthase 350 565 - -
Rops6g03247 889 NCBIfam trehalose-phosphatase 626 874 IPR003337 GO:0003824|GO:0005992
Rops6g03247 889 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 627 744 - -
Rops6g03247 889 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 97 585 - -
Rops6g03247 889 NCBIfam HAD-IIB family hydrolase 630 832 IPR006379 -
Rops6g03247 889 CDD HAD_TPP 629 865 - -
Rops6g03247 889 Pfam Trehalose-phosphatase 631 864 IPR003337 GO:0003824|GO:0005992
Rops6g03247 889 CDD GT20_TPS 97 581 IPR001830 GO:0003824|GO:0005992
Rops6g03247 889 Pfam Glycosyltransferase family 20 97 581 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03247 Rops-Chr6 56381817 56386471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03247 38 888 Trehalose Biosynthesis Gene Families AT4G17770 78.089 0.0 1429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03247 K16055 - gmx:100782799 1612.05