Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03245 ATGTTCCCTTTTGTTTTGCTGTTTTTTCTTCTTTGCTGCAACTCTCTTGCACCTGTGGTGAATTCTCTGAATGCTGAAGGCTATGTGATTTTGACCTTAAAGCAGTCCCTCACAGACCCACAAGGGTCTATGAGTAACTGGAATTCTTCTGATGATAACCCTTGTTCATGGAATGGGATTACTTGCAAGGACCAAACTGTGGTGTCCATTAGTATCCCAAAAGGGAAACTTTATGGCTCTCTTCCTTCTACTCTAGGATCTCTTTCCCAGCTTCGCCATGTGAACTTTAGGAACAACAAGCTATTTGGAAGCCTGCCTACACAGCTCTTTCAAGCTCAGGGACTGCAAAGTTTGGTGCTTTATGGTAATTCATTATCTGGGTCTGTTCCAAGTGAGATTCAGAAGCTCAGGTACCTTCAAATTCTAGATTTATCCCAAAATTTCTTCAATGGGTCATTGCCTGTTACAATTGTCCAATGCAAGAGACTCAAAACCCTTGTTCTCAGTAGAAACAATTTCACTGGCCCTTTGCCAGATGGATTTGGTACTGGTTTGATTTCTCTGGAAAAACTAGACCTTTCTTTTAATCAATTTAATGGTTCAATTCCTAGTGACATGGGAAATTTATCAAGCCTGCAAGGAACTGTTGATTTGTCTCATAATGATTTTAATGGTTCAATCCCAGCCAGCCTCGGCAATCTGCCTGAGAAGGTTTACATTGATCTTACATACAACAATTTAAATGGTCCAATACCCCAAAATGGTGCTTTAATGAATAGAGGACCAACTGCTTTTGTTGGCAATCCTGGTCTATGTGGTCCTCCTTTGAAGAATCCATGTAGCTCTGATACTCCATCTACTACTACCTCACCTGCCTCGTTTCCATTTCTTCCTGATGACTCCTCTCCTCAGGATGCTGGTAATGGTTCTAGGACAAGTGAGAAAAGCAAAGGGCTATCTAAAGGTGCTGTGGTTGGCATTGTTGTGGGTGATTTAATTGGAATTTGCCTTTTGGGTTTGCTGTTCTCTTTCTTTTACTCAAGGGTTTGTGGTTTTAACCTGGATCGGGATGAAGATGGTGTTAATAAGGGAAGGAAAGGAAGGAAAGAGTGCTTGTGCTTTAGAAAGGATGAATCTGAGGTCCTATCTGATCATGTTGAGCAATATGATCTTGTCCCATTAGATACCCAAGTGGCCTTTGATTTGGATGAGCTTCTTAAGGCTTCAGCTTTTGTTTTGGGGAAGAGTGGGATAGGGATTATGTACAAAGTGGTGCTTGAAGATGGACTTGCTTTGGCTGTGAGAAGATTGGGAGAGGGAGGTTCTCAAAGGTTTAAAGAGTTCCAAACAGAAGTAGAAGCTATAGGAAAGTTGAGGCATCCAAATATTGTGACTCTGAGAGCCTATTATTGGTCTGTTGATGAGAAGCTTCTCATATATGATCATATACCCAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGCTGGACTACTCTCATTTACACCACTATCTTGGTCCTATAGACTGAAAATCATGAAAGGAACTGCAAAAGGATTGGTCTATTTGCATGAATTTAGCCCCAAAAAATATGTCCATGGAGACCTCAAGCCAAGTAACATACTTCTTGGACATAACATGACACCCCACATTTCTGATTTTGGACTTGGGCGCCTTGCAAATATTGCTGGGGGGTCCCCAACCTTGCAATCCAACCGAGTGGCTGCAGAGAAACTACAAGAAAGACAAAAGAGCATGTCCACTGAAGTTACTACTAACATTTTGGGAAATGGTTATCAGGCTCCAGAAGCACTGAAAGTGGTGAAGCCATCACAAAAGTGGGATGTTTATTCATATGGTGTGATTTTGTTAGAAATGATCACAGGAAGGTTACCAATTGTCCAAGTAGGTAACTCAGAAATGGACCTTGTTCAATGGATTCAGTTCTGCATTGAGGATAAGAAGCCACTCTCAGATGTATTAGATCCATACTTGGCTGAAGATGCAGATAAGGAGGAAGAGATAATTGCAGTTTTGAAGATTGCAATGGCTTGTGTCCATAGCAGCCCTGAAAAGAGACCTACAATGAGGCACGTGCTTAATGCTTTAGATAGATTGTCCATTTCCTCTGATTGA 2136 0.4153 MFPFVLLFFLLCCNSLAPVVNSLNAEGYVILTLKQSLTDPQGSMSNWNSSDDNPCSWNGITCKDQTVVSISIPKGKLYGSLPSTLGSLSQLRHVNFRNNKLFGSLPTQLFQAQGLQSLVLYGNSLSGSVPSEIQKLRYLQILDLSQNFFNGSLPVTIVQCKRLKTLVLSRNNFTGPLPDGFGTGLISLEKLDLSFNQFNGSIPSDMGNLSSLQGTVDLSHNDFNGSIPASLGNLPEKVYIDLTYNNLNGPIPQNGALMNRGPTAFVGNPGLCGPPLKNPCSSDTPSTTTSPASFPFLPDDSSPQDAGNGSRTSEKSKGLSKGAVVGIVVGDLIGICLLGLLFSFFYSRVCGFNLDRDEDGVNKGRKGRKECLCFRKDESEVLSDHVEQYDLVPLDTQVAFDLDELLKASAFVLGKSGIGIMYKVVLEDGLALAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDHIPNGSLATAIHGKAGLLSFTPLSWSYRLKIMKGTAKGLVYLHEFSPKKYVHGDLKPSNILLGHNMTPHISDFGLGRLANIAGGSPTLQSNRVAAEKLQERQKSMSTEVTTNILGNGYQAPEALKVVKPSQKWDVYSYGVILLEMITGRLPIVQVGNSEMDLVQWIQFCIEDKKPLSDVLDPYLAEDADKEEEIIAVLKIAMACVHSSPEKRPTMRHVLNALDRLSISSD* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03245 711 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Rops6g03245 711 PANTHER OS05G0588300 PROTEIN 159 706 - -
Rops6g03245 711 MobiDBLite consensus disorder prediction 279 316 - -
Rops6g03245 711 FunFam Leucine-rich repeat protein kinase family protein 483 709 - -
Rops6g03245 711 SMART serkin_6 412 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03245 711 SMART LRR_typ_2 88 112 IPR003591 -
Rops6g03245 711 SMART LRR_typ_2 136 160 IPR003591 -
Rops6g03245 711 SMART LRR_typ_2 185 209 IPR003591 -
Rops6g03245 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Rops6g03245 711 MobiDBLite consensus disorder prediction 276 316 - -
Rops6g03245 711 SUPERFAMILY Protein kinase-like (PK-like) 412 703 IPR011009 -
Rops6g03245 711 Gene3D Ribonuclease Inhibitor 75 283 IPR032675 -
Rops6g03245 711 Gene3D Ribonuclease Inhibitor 17 74 IPR032675 -
Rops6g03245 711 FunFam Leucine-rich repeat receptor-like protein kinase 187 282 - -
Rops6g03245 711 FunFam Leucine-rich repeat receptor-like protein kinase 390 482 - -
Rops6g03245 711 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 23 183 - -
Rops6g03245 711 ProSiteProfiles Protein kinase domain profile. 407 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03245 711 SUPERFAMILY L domain-like 26 277 - -
Rops6g03245 711 Pfam Leucine rich repeat N-terminal domain 24 62 IPR013210 -
Rops6g03245 711 Gene3D Transferase(Phosphotransferase) domain 1 483 710 - -
Rops6g03245 711 Pfam Protein kinase domain 413 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03245 711 CDD STKc_IRAK 413 706 - -
Rops6g03245 711 Gene3D Phosphorylase Kinase; domain 1 377 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03245 Rops-Chr6 56353856 56356483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03245 1 711 Receptor kinase-like Gene Family AT2G01210 67.175 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops6g03245 Pkinase 6.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03245 - - gmx:100792873 1211.44