Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03231 ATGGAAAATGAGTCAGTGTCACTTATCTACTATGTTCCTAGCTTTGCACGAGGCTTGAACATTCTGCTAGTACATGATGACACATTGTCTCTAGTGTACCTCTCATCACTGCTTGAGCAATACTCATTCAAAGTTACTACTACAAATGACACATCAGCAGCTGCATCCATGATTTGCGATCATGAATGCAAGTTCAAACTTGTCATGGCTAAAAGTAACATGCCTGGCATGGATGCCCTATCTTTTCTGGACGTGGTGCATGAAAAGGACATTCCTGTTATCTTCATTTCCTCCGGAGTATTTGATGATCTAACCAGGAAAGCTTTAACCAAGGGATCATGCTATTTTCTTCAAGAGCCAATAAATTCAAGTGATCTAAAAAATTTATGGCAGCTGGTGTATCACCCGAAAGTCGATCCACTCAAAGAAACTCAAAATGTAAATTCTGAGAACAAGGTGTGCAATCCAGAAGGATCACAACATACCAAGATCACACAGGTTTATGGAGCAAATGGAGAAGGAAACCATGATGATAAAGGGGGCAAGCTGAAAGAGAAGAGAACAGTTGATAACCAAGCAATGCCAGGTTCTTTGATAGCCACACAATGCCAGGTTCATAGAGTAAATGGAAAAAGAAACCATGATGATAGTGGGGGCAAGCTAAAAGAGAATAGAACAATCGATAACCTCGTAATGCCAAGTTCATGGAGCTCAGCTCAGATGAACTTTGATAACAATTATCATGACAGTGTATTTTCTGAGTCAAGACGTGTTTGGACTCCTGAGCTGCATCAAAAGTTTACAGAAGCTGTACATGCGTTAGGAGAGAACGATGCTCGTCCAAAAGCTATATTAAAAAGGATGAAGGAGCCTTACCTGACAGTTCGCCAGGTTGCAAGTCACTTGCAGAAATACAAAGCTCGGCTGAAGCAAATCGAGAATGACAGCAAATCTGATTTGCCTCCTGCAAACACATCATCATGCTTGAGCGGCACAGCCCAGATTCCCTCACCATCTGAAGGGTTCAGCTTAGAAACAGAGGATCTCCCAGCACCACCTGCTACCTTGAATGAGAGCCAGAATCAAAATCAGTTTCTAATGAACAATGCTGAAACTCAAGACACAGAGTTAGATATTCTCCAACAGTTAGAAACACAAGAACATCCAAACCTTGCAACTACAGTGGAAAATCAAAACCAGTTTCTGATGAACAACGCTGAAACTCAAGACATAGAGTTAGATATCGTCCAACTGTTAGAAACACAAGAACATCCAACCCTTGCAAGTGAAATGACCAGCCAAAGTCTAGATTCTACAGTGGAAAATCAAAACCAGTTTCTGATTGACAACGCTGAAACTCAACAAGACATAGAGTTAGATATTCTCCAACTGTGGGAAACACAAGAACATCCAACCCTTGCAACTGAATTTACCAGCCAAAGTTTAGATTCCAAAGTGGAAAATCAAAACCTGATTGTGATGAACAACGCACAAGACATAGAGTTTGATATTCTCGAACTGTTGGAAACACAGGACAATCCAACCCTTGCAACTGAATGGAGCAGCCAAAGTTTAGATTCTACAGTGGAACACTCTGTGCCTACTGCTGTTTCAGTGGATCAAGACCAACCTGCAACTGAATTCGATGATATCATGAAAATGCTTGCGGAAGACTGTGACAGTTTTGATTGGTTTGGAAATGGAGCTAATAATCCACCTGAAGTTGATCAATACACTGAGATGTTGAAGACAGTTCTAGATGGAGACAACTTCAATCCTCCAGAATTTGATATCGACGACCCCAACAGATTATCAGGATTGAATGGACCTTGA 1833 0.4113 MENESVSLIYYVPSFARGLNILLVHDDTLSLVYLSSLLEQYSFKVTTTNDTSAAASMICDHECKFKLVMAKSNMPGMDALSFLDVVHEKDIPVIFISSGVFDDLTRKALTKGSCYFLQEPINSSDLKNLWQLVYHPKVDPLKETQNVNSENKVCNPEGSQHTKITQVYGANGEGNHDDKGGKLKEKRTVDNQAMPGSLIATQCQVHRVNGKRNHDDSGGKLKENRTIDNLVMPSSWSSAQMNFDNNYHDSVFSESRRVWTPELHQKFTEAVHALGENDARPKAILKRMKEPYLTVRQVASHLQKYKARLKQIENDSKSDLPPANTSSCLSGTAQIPSPSEGFSLETEDLPAPPATLNESQNQNQFLMNNAETQDTELDILQQLETQEHPNLATTVENQNQFLMNNAETQDIELDIVQLLETQEHPTLASEMTSQSLDSTVENQNQFLIDNAETQQDIELDILQLWETQEHPTLATEFTSQSLDSKVENQNLIVMNNAQDIEFDILELLETQDNPTLATEWSSQSLDSTVEHSVPTAVSVDQDQPATEFDDIMKMLAEDCDSFDWFGNGANNPPEVDQYTEMLKTVLDGDNFNPPEFDIDDPNRLSGLNGP* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03231 610 NCBIfam myb-like DNA-binding domain, SHAQKYF class 255 307 IPR006447 GO:0003677
Rops6g03231 610 MobiDBLite consensus disorder prediction 590 610 - -
Rops6g03231 610 SUPERFAMILY CheY-like 17 135 IPR011006 -
Rops6g03231 610 Coils Coil 295 315 - -
Rops6g03231 610 MobiDBLite consensus disorder prediction 313 357 - -
Rops6g03231 610 ProSiteProfiles Response regulatory domain profile. 20 134 IPR001789 GO:0000160
Rops6g03231 610 PANTHER - 11 309 - -
Rops6g03231 610 FunFam Two-component response regulator 253 313 - -
Rops6g03231 610 MobiDBLite consensus disorder prediction 317 341 - -
Rops6g03231 610 Gene3D - 253 312 - -
Rops6g03231 610 Pfam Myb-like DNA-binding domain 256 306 IPR001005 -
Rops6g03231 610 SMART REC_2 19 130 IPR001789 GO:0000160
Rops6g03231 610 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 310 IPR017930 -
Rops6g03231 610 Gene3D - 19 152 - -
Rops6g03231 610 Coils Coil 356 376 - -
Rops6g03231 610 Pfam Response regulator receiver domain 21 128 IPR001789 GO:0000160
Rops6g03231 610 SUPERFAMILY Homeodomain-like 253 311 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03231 Rops-Chr6 56165040 56169718 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03231 12 337 Response Regulator Gene Family AT1G68210 33.535 1.16e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops6g03231 Response_reg 4.9e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03231 - - vun:114191433 305.064