Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03226 ATGGGTTTGCAAAACCAGTTTAACGACGTGTCGTCGGATTCGATTCCTCTGCTTGTGATAGCGCGAATCGCGAGCTGTGTCCACTACCTCCGTTCTTTGCTAATCGCTCTTCTGCAATCTCTTGGTTTCTCCAGATTCCACACCGACCAGATCGTCGACGACCACTTCTTCGCCGCCGTCGGATCCGGACTCGCCGGACTTATCATGCTTTCCGATCAACTCACTCTCAACAACCAATTATTCTACACCTACGACGGTGCCACCGCTGACCACGACTGTGTGGTGTGTCAGAACACCTTCCAGGATGGTGACCAGGTTCGAAGGCTTCCCTGTCGCCACGTCTTCCACCGCCGATGCTTCGACGGTTGGCTTCATCAATACAAGTTCAACTGCCCTCTCTGCCGTTCACCGCTCTTCTCCGACGAGCGCGTGCCTCTCACGGAACGCCGTGTCGGCCGCCAACTCATCTCGTGGTTCTCTCTGCGCTGA 489 0.5542 MGLQNQFNDVSSDSIPLLVIARIASCVHYLRSLLIALLQSLGFSRFHTDQIVDDHFFAAVGSGLAGLIMLSDQLTLNNQLFYTYDGATADHDCVVCQNTFQDGDQVRRLPCRHVFHRRCFDGWLHQYKFNCPLCRSPLFSDERVPLTERRVGRQLISWFSLR* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03226 162 PANTHER RING ZINC FINGER PROTEIN-RELATED 86 143 - -
Rops6g03226 162 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Rops6g03226 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 143 IPR013083 -
Rops6g03226 162 SUPERFAMILY RING/U-box 92 141 - -
Rops6g03226 162 SMART ring_2 93 134 IPR001841 -
Rops6g03226 162 Pfam Ring finger domain 92 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03226 Rops-Chr6 56084549 56085037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03226 1 161 C3H Transcription Factor Family AT1G15100 50.000 1.99e-48 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03226 K16282 - gmx:100803789 262.692