Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03172 ATGGTGGTTTTTGGCGGGAAAAAGGTACACCAAATGGTCGCCGGCTTCGGCGGCAGTGGCCTCGGCCAGGTCGTCATCGCCGTCGCCGTCTCCTTCCTCGTCCGCATCTTCTCGGCTCCCGGCCCCGCCCTCTTGCCGGAGAACGACGATAACGACGATGTTCCGAACGACGATTCTCACGACGGTGAAACTCCACCCTCCGGAAAAGTCACGCCGGTTACAATCCGCTGGAAAAACATCAATTGCTCCCTTTCCGATAAATCCTTCAAGTCCGTGAGGTTTTTGCTTAAAAATGTGAGTGGAGAAGCGAAGCCTGGAAGATTATTAGCCATAATGGGACCTTCAGGTTCAGGGAAGACAACATTGCTTAATGTTCTTGCGGGTCAGCTGGCAGCATCGCCAAGGCTGCATTTGTCTGGCATTTTGGAGTTCAATGGAAAGCCTAGTTCCAAGAACCCTTACAGGTTTGCTTACGTGAGACAGGAGGATCTCTTCTTCTCTCAGCTCACTGTGCGGGAAACACTGTCTCTTGCTACAGAACTCCAGCTTCCCAGTATATCTTCTGTGGAGGAGAAAGATGAATATGTGAACAATCTCCTTTTCAAACTAGGTTTGGTCAGTTGTGCTGATACAATTGTTGGTGATGCAAAAGTTCGTGGAATTAGTGGCGGTGAAAAGAAACGCTTATCATTGGCATGTGAACTGCTTGCAAGCCCATCTGTTGTATTTGCTGATGAACCCACAACAGGACTTGATGCCTTCCAGGCTGAGAAAGTTATGGAAACTCTCCAACAACTTGCACAAGATGGTCATACTGTAGTTTGCAGTATACATCAGCCAAGGGGTTCAGTGTATAGTAAATTCGACGACATTGTCTTGCTGACTGAGGGTTCACTTGTTTATGCTGGTCCTGCTGGTGATGAACCATTGGCACACTTCTCAAAATTCGGATACCACTGCCCAGATCATGTAAATCCTGCTGAGTTTTTGGCTGATCTCATATCCATAGACTACAGTTCTGCAGATAGTGTCTATTCCTCTCGAAAAAGGATTGATGGGCTTGTTGAGTCATTCTCACAAAGACTATCTACAGTAATATATGCAACTCCAATTACTATAGATGATCTCTCAAAAAATAGAAAGAAAATCAGCAAGAGGACTGTAGCAAAGAAGAAAGGAGGTTGGTGGAGGCAATTTTGGTTGCTCCTTAGACGAGCATGGATGCAGGCTTCCCGTGATGCACCTACCAACAAAGTTCGGGCAAGGATGTCAATTGCATCAGCTATTATCTTTGGGTCAGTTTTTTGGAGAATGGGGAGATCTCAGACTTCAATACAAGACAGAATGGGATTGCTTCAGGTTACTGCAATAAACACAGCGATGGCTGCTCTCACAAAGACTGTAGGTGTGTTTCCAAAGGAACGGGCAATTGTTGATAGAGAACGTGCTAAAGGCTCCTATTCCTTGGGTCCCTATCTGTTTTCAAAATTGTTGGCTGAGATTCCCATCGGAGCAGCATTTCCGTTAATGTTTGGTACTGTTTTGTACCCAATGGCACGTCTTCATCCTACTTTGATGAGATTTGGGAAATTCTGTGGAATTATCACTATGGAATCTTTTGCCGCATCTGCAATGGGTCTCACTGTTGGTGCTATGGTTCCAACCACTGAAGCAGCAATGGCAGTAGGCCCCTCTCTTATGACAGTTTTTATCGTATTTGGTGGCCTCTATGTCAATCCTGAGAATACCCCAATCATTTTCCGCTGGATTCCTAATGTCTCTCTGATTAGATGGGCCTTTCAGGGACTTTGCATCAATGAATTTAGTGGTCTTCAATTTGAACATCAGAATTCATTTGATATTCAAACTGGAGAGCAGGCACTAGAGCGTATTTCCTTTGGAGGAAGTAGGATCAGGGATACGGTGGTAGCACAAAATAGAATACTGTTATTTTGGTATTGCACCACCTACCTTCTCCTTGAGAAAAACAAGGCCAAATACCAGCAACTTGAACCAATCCCTCTTGACTACGACAAACCACAATTAAAACTTGAGGAGTTCGATTCTAAACAAGTTGATCAGACACTTGGAGCTCCACCAACCAGCCAAGTTGATTCCAACCAGCCGCTTGAGTCACCTGAAGAAGATCCTGTTGGCCCTTTTGTCCTAGAAGGATGA 2178 0.4532 MVVFGGKKVHQMVAGFGGSGLGQVVIAVAVSFLVRIFSAPGPALLPENDDNDDVPNDDSHDGETPPSGKVTPVTIRWKNINCSLSDKSFKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLAASPRLHLSGILEFNGKPSSKNPYRFAYVRQEDLFFSQLTVRETLSLATELQLPSISSVEEKDEYVNNLLFKLGLVSCADTIVGDAKVRGISGGEKKRLSLACELLASPSVVFADEPTTGLDAFQAEKVMETLQQLAQDGHTVVCSIHQPRGSVYSKFDDIVLLTEGSLVYAGPAGDEPLAHFSKFGYHCPDHVNPAEFLADLISIDYSSADSVYSSRKRIDGLVESFSQRLSTVIYATPITIDDLSKNRKKISKRTVAKKKGGWWRQFWLLLRRAWMQASRDAPTNKVRARMSIASAIIFGSVFWRMGRSQTSIQDRMGLLQVTAINTAMAALTKTVGVFPKERAIVDRERAKGSYSLGPYLFSKLLAEIPIGAAFPLMFGTVLYPMARLHPTLMRFGKFCGIITMESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGLYVNPENTPIIFRWIPNVSLIRWAFQGLCINEFSGLQFEHQNSFDIQTGEQALERISFGGSRIRDTVVAQNRILLFWYCTTYLLLEKNKAKYQQLEPIPLDYDKPQLKLEEFDSKQVDQTLGAPPTSQVDSNQPLESPEEDPVGPFVLEG* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03172 725 Gene3D - 69 309 IPR027417 -
Rops6g03172 725 MobiDBLite consensus disorder prediction 45 71 - -
Rops6g03172 725 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 62 627 - -
Rops6g03172 725 SMART AAA_5 105 298 IPR003593 GO:0016887
Rops6g03172 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 321 IPR003439 GO:0005524
Rops6g03172 725 Pfam ABC transporter 96 248 IPR003439 GO:0005524
Rops6g03172 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 307 IPR027417 -
Rops6g03172 725 FunFam ABC transporter G family member 7 73 311 - -
Rops6g03172 725 ProSitePatterns ABC transporters family signature. 221 235 IPR017871 GO:0005524|GO:0016887
Rops6g03172 725 MobiDBLite consensus disorder prediction 694 725 - -
Rops6g03172 725 MobiDBLite consensus disorder prediction 694 710 - -
Rops6g03172 725 Pfam ABC-2 type transporter 278 335 IPR043926 GO:0140359
Rops6g03172 725 Pfam ABC-2 type transporter 397 608 IPR013525 GO:0016020|GO:0140359
Rops6g03172 725 CDD ABCG_EPDR 72 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03172 Rops-Chr6 55315146 55329759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03172 95 303 Calmodulin-binding Proteins AT2G36910 27.778 1.64e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03172 K05681 - gmx:100788256 1278.85