Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03157 ATGACTCTTTCTCTACAACCACAGGAAAAAAAATGTGAAGAGATCATAGCAGAAGCAGTGCACAATAGAAACCTCAAATCAACAATGACGACTCTCTCAGAAACCTACGCTTGTGCACCCTCCACCGAACGTGGCCGCGGAATCCTCATCTCCGGTGATCCCAAATCCAACAACATTCTCTACTGCACCTCCAGATCCGTCATCATCCGCAACCTCGACAACCCCCTTCAAGTTTCCGTCTACGTCGATCATGCCTACCCCGTCACCGTCGCACGTTACTCCCCCAACGGCGAGTGGATCGCCTCCGCTGATGTCTCCGGCACCGTCCGCATCTGGGGGACCCACAATGAGTTTGTTCTCAAGAACGAGTTTCGGGTCCTCTCGGGTCGGATCGACGACCTCCAATGGTCCTTCGATGGGTTAAGGATCGTTGCCTGTGGTGATGGCAAGGGCAAATCATTTGTCCGCGCCTTCATGTGGGATTCAGGTTCCACAGTTGGTGATTTTGATGGCCATTCGCGGCGGGTTTTAAGTTGTGCATTCAAACCAACAAGGCCATTCCGCATTGTCACTTGTGGAGAAGATTATTTAGCCAATTTTTATAATGGTCCACCCTTCAAGTTCAATATGTCCATCAGGGACCATTCAAATTTTGTCAACTGTGTTAGATTCTCTCCAGATGGAAGCAAATTCATCACTGTTAGCTCAGACAGGAAAGGAATTATATATGATGGAAAAACAGGAAATAAACTTGGAGAGTTGTCCACAGAGGATGGCCACAAGGGCAGCATATATGCTGTTAGTTGGAGTCCTGACAGTAAACAGGTTCTTACTGTGTCTGCTGACAAATCTGCGAAAGTATGGGATATTCTTGAGGATGGTAGTGGAACAGTAAAGAAGACTTTGACATTTACTGAGACTGGTGGGGTGGAGGACATGCTTGTTGGTTGTCTTTGGCATAATGATCATCTGCTTACTGTCTCTCTTGGTGGCACGATTAATTTATATTCTACCAAGGATTTAGATAAAAGCCCATTGTCATTTGCTGGTCACATGAAGAATGTCACAGTTTTGACTCTGCTCAACAGAGGTGAAAAGTTGCTTTTGTCCAGCAGCTATGATGGACCGATCATTAGATGGATTCCAGGCATTGGTTACAATGGTAAGCTTGAGACTAAACAATTTGGATTAATCAAATTGTTAGCAGTTGCCGAAGAACAAGTTATTACTTGTGGATTTGACAACAAGGTATACAGAGTTCCTCTTCATGGGGATAATTTTGGTCCTGCTGAGCATGTTGATGTTGGAAGTCAGCCCATGGATTTGAGCCTTGCACTTAATTCCCCTGAACGTGCTCTCATTGCAATTGAATCCGGGGTTGTCTTACTTAGCGGTTCAAAAATTGTCTCCACTATAAACCTGGGCTTTGTCGTGACCGCAGCTGCTATTTCACCTGATGGTAATGAAGCAATTGTAGGGCGGCAAGATGGTAAGTTGCACATATATTCTGTCTCAGGAGATACACTTACAGAACAGAGTGTTCTTGAGAAGCACCGAGGCCCCATCAGTGCAATCAGATATTCTCCAGACGTTTCCATGTTTGCATCAGCTGATTTGAATCGTGAAGCTGTTGTGTGGGACTGTGCTTCTAGGGAGGTGAAGCTTAATAACATGTTGTTTCACACTGCACGTATTAACTGCCTAGCTTGGTCACCTGATAGCAGATTGGTAGCTACTGGTTCACTTGATACATCTGTCATTATATACGAAGTTGGAAAGCCAGCATCAAGCCGCAGAACCATAAAAGGTGCTCATTTAGGTGGAGTGTATGGGTTGGCTTTTGTTGATCAGGAAAGAGTGGTCAGTTCAGGAGAAGATGGTTGTGTTCGTGTTTGGAGTTTAAATTCAGAATAA 1914 0.4504 MTLSLQPQEKKCEEIIAEAVHNRNLKSTMTTLSETYACAPSTERGRGILISGDPKSNNILYCTSRSVIIRNLDNPLQVSVYVDHAYPVTVARYSPNGEWIASADVSGTVRIWGTHNEFVLKNEFRVLSGRIDDLQWSFDGLRIVACGDGKGKSFVRAFMWDSGSTVGDFDGHSRRVLSCAFKPTRPFRIVTCGEDYLANFYNGPPFKFNMSIRDHSNFVNCVRFSPDGSKFITVSSDRKGIIYDGKTGNKLGELSTEDGHKGSIYAVSWSPDSKQVLTVSADKSAKVWDILEDGSGTVKKTLTFTETGGVEDMLVGCLWHNDHLLTVSLGGTINLYSTKDLDKSPLSFAGHMKNVTVLTLLNRGEKLLLSSSYDGPIIRWIPGIGYNGKLETKQFGLIKLLAVAEEQVITCGFDNKVYRVPLHGDNFGPAEHVDVGSQPMDLSLALNSPERALIAIESGVVLLSGSKIVSTINLGFVVTAAAISPDGNEAIVGRQDGKLHIYSVSGDTLTEQSVLEKHRGPISAIRYSPDVSMFASADLNREAVVWDCASREVKLNNMLFHTARINCLAWSPDSRLVATGSLDTSVIIYEVGKPASSRRTIKGAHLGGVYGLAFVDQERVVSSGEDGCVRVWSLNSE* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 81 112 - -
Rops6g03157 637 Gene3D - 35 633 IPR015943 GO:0005515
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 112 IPR001680 GO:0005515
Rops6g03157 637 FunFam Actin-interacting protein 1 366 634 - -
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 602 637 - -
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 558 591 - -
Rops6g03157 637 SUPERFAMILY WD40 repeat-like 321 635 IPR036322 GO:0005515
Rops6g03157 637 SMART WD40_4 117 161 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 205 244 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 247 289 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 508 547 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 162 202 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 74 113 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 594 633 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 465 503 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 341 381 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 297 337 IPR001680 GO:0005515
Rops6g03157 637 SMART WD40_4 552 590 IPR001680 GO:0005515
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 515 547 IPR001680 GO:0005515
Rops6g03157 637 Gene3D - 39 363 IPR015943 GO:0005515
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 558 591 IPR001680 GO:0005515
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 515 547 - -
Rops6g03157 637 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 29 634 - -
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 290 IPR001680 GO:0005515
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 290 - -
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 253 IPR001680 GO:0005515
Rops6g03157 637 FunFam Actin-interacting protein 1 39 365 - -
Rops6g03157 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 637 IPR001680 GO:0005515
Rops6g03157 637 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Rops6g03157 637 Pfam WD domain, G-beta repeat 79 112 IPR001680 GO:0005515
Rops6g03157 637 Pfam WD domain, G-beta repeat 561 589 IPR001680 GO:0005515
Rops6g03157 637 Pfam WD domain, G-beta repeat 252 289 IPR001680 GO:0005515
Rops6g03157 637 Pfam WD domain, G-beta repeat 604 633 IPR001680 GO:0005515
Rops6g03157 637 Pfam WD domain, G-beta repeat 211 239 IPR001680 GO:0005515
Rops6g03157 637 SUPERFAMILY WD40 repeat-like 54 380 IPR036322 GO:0005515
Rops6g03157 637 CDD WD40 84 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03157 Rops-Chr6 55085261 55090011 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03157 212 536 Eukaryotic Initiation Factors Gene Family AT2G46290 24.024 1.03e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03157 K24736 - gmx:100798693 1098.57