Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03154 ATGGATCCTGTGCCTGCTGATGTGTCTAATCCACCTGCTGTTAAAGTTCCATCTATTTCACCTCCTGCTAAGGAGACTGATGAACAAGCTTCAGCTGCTGTAGCCTCCGGACAAGATGATTCTACACGTGAGGCACCATCTAGGCTATCTCCCACTGCCATATCATCTTGGGCCAAAAACTTGAAAATTTCTCAACCATTTTCTGGCTCCCAAGATGACTCATCAAGTGAAAATGCTGGGAAATCAGCTTTTGCACGCATCACTAGTAATTTGGGATTGCGGTTGTCTCCAAAATCTCCTGTGGCAGATGAAAGTTCCAATGAAACAACAGCACAATCTAATTTGTTTGGAAGTATTACAAAAGGCCTAGTTGATTCTTCCAAGAATGCAGTGAAAGCTGTGCAGGTTAAAGCACGGCATGTTGTTTCTCAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACAGAAAACATTATTGCTATGGGGTTCCCTGCTGGTGACATGAGCTCTGGGTTTTTTGGTTATGTCGAAGGATTTTACAGAAATCATATGGAAGAAGTGATTAAGTTTTTCGAGACTCACCATAAGGGCAAATACAAAGTATATAATCTTTGTTCTGAGCGGCTGTATGATGCATCATTGTTCGAGGGGAAGGTGGCCTGCTTCCCATTTGATGACCATAATTGCCCACCAATTCAACTGATTATATCATTTTGTCATAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCTAGGACAGGGTTGATGATTTCTAGTCTTCTATTATTCTTAAAGTTCTTCCCAACCGCCGAGGAGTCGATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAAGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGGGTTTTGACTTACTTTAATGGCGAAAACCCACCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCGTATTGGATCAGGCCCTCTATAACTGTATCAGATCATAGAGGCGTGTTGTTCTCAACCAAAAAGCATCCAAGGACCAAAGATCTTTTGCCAGAAGATTTTTGGTTTAGTGCACCAAAGAAGGGAGTGATGGTCTTTGCTTTGCCTGGAGAGCCTGGTCTTACAGAGTTGGAGGGGGACTTCAAAATCCATTTTCATGATCGCCAAGGAGATTTTTACTGTTGGTTGAACACAACTATGACAGAAAATAGGAAAGTTTTGAACACCAGTGATCTTGATGGCTTTGACAAGAGAAAATTGCCTTCTCCAGGATTCCTGGTTGAGGTCGTCCTAGTGGATTATAATGGCGATGTTGTAACTTCCAAACCTGAAACTATGAAGAAATCAGATGAGAGTTCGAGTAATAGTCCCGCCCCAGTTGAAGGGAGCACCCCAGCACAGAATGCAGACAAAGAGTCAGGGGGTCAGGATAAAGATGATGTGTTTTCAGATGGCGAGTCAGAGCATACTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTGAAGCAGTTGAAACAGTTGCAAGTGCTACCAGAGAGTCTGAGTCAAACAAAAATAAAAATCAAATTGCAAAATTAACACATGCAACAGAACAAGTTTCTTTGGGAAATAAGACCTCTACGCCAACTCAAAATGCTGGTGAGCCAAAAACTGATGTTGATGGAAGAACAGTGTCCAGTCTCGAGGTGCCGAGCTCAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTCACGTTCGGAGATGATGAAGACTATGAAAGTGATTGA 1857 0.4249 MDPVPADVSNPPAVKVPSISPPAKETDEQASAAVASGQDDSTREAPSRLSPTAISSWAKNLKISQPFSGSQDDSSSENAGKSAFARITSNLGLRLSPKSPVADESSNETTAQSNLFGSITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPIQLIISFCHSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSITVSDHRGVLFSTKKHPRTKDLLPEDFWFSAPKKGVMVFALPGEPGLTELEGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTSDLDGFDKRKLPSPGFLVEVVLVDYNGDVVTSKPETMKKSDESSSNSPAPVEGSTPAQNADKESGGQDKDDVFSDGESEHTASSRSKQTKAPSEAVETVASATRESESNKNKNQIAKLTHATEQVSLGNKTSTPTQNAGEPKTDVDGRTVSSLEVPSSESEFKAMAADASVFTFGDDEDYESD* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03154 618 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Rops6g03154 618 MobiDBLite consensus disorder prediction 467 584 - -
Rops6g03154 618 MobiDBLite consensus disorder prediction 476 497 - -
Rops6g03154 618 MobiDBLite consensus disorder prediction 31 53 - -
Rops6g03154 618 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 124 576 - -
Rops6g03154 618 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Rops6g03154 618 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Rops6g03154 618 MobiDBLite consensus disorder prediction 1 53 - -
Rops6g03154 618 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Rops6g03154 618 MobiDBLite consensus disorder prediction 520 577 - -
Rops6g03154 618 SMART PTEN_C2_2 331 459 IPR014020 -
Rops6g03154 618 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Rops6g03154 618 MobiDBLite consensus disorder prediction 498 519 - -
Rops6g03154 618 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 132 329 - -
Rops6g03154 618 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 261 300 IPR000387 GO:0016311|GO:0016791
Rops6g03154 618 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03154 Rops-Chr6 55046279 55064341 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03154 33 618 Protein tyrosine phosphatase (PTP) family AT3G19420 70.184 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03154 K01110 - gmx:100784003 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03154 6 55046279 55064341 Rops6g03154 6 55046279 55064341 ECH
Rops1g01816 1 37375952 37382262 Rops6g03154 6 55046279 55064341 PCT