Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03113 ATGCTTCCGGGATGCATCACAATTTGGTCTATTTCGATTTTGATTTCCCTCTCTGGTTCTTCGCTTACTCGTGGCTTCGTCTTCTCTCATTTCCTACACGGTGGCGGTGGTGCAAAAACTCTCACTGATGCTACATGTTCTACATCCACGGAGACCTCCTCCAATGATAATGTTTTGTCGATGGGAACCTTTTTGTGTTGCAAAATGACCACTTGGGTCTTTGTTTCTGACTTCAAAATTGGAACTTGTGACATAAACATGGTTACAAATGTCTCTCACACTTTATGCCACTTGACATTTGTTGCTCTCTCTTTTTATAAACCTTCTCCTTTTCGTTTCTCTTTCTCACAAAAGCCCCTCTTCCAAAATGCTTCCACATTTCTCTTTCAACCTTTGAAACTCAACAGGTTACATACCATTTCCATTCCAAGTTCTGAGCATTTCTTTTTTTTGATGGAGGCTAAGGAGGAATTCGAAGTGGACCATTTGACTACACCCACAGGGACCAGTTTCTCTCAGTTACTATTGGGAGATGATGATGATGATGATGCTGATGGGAATGCATTGGGTCTTGGTGTGGACCAGACCTACAACCTTTCTAACTCCACTGTTTTCTCCCTTCACAACACACCCAAAATGTTATGTTTTGGAAACTATCAAAATGAAGGGGACCTATTGCTTTCTGAAACCAACGTAACCCCTCAGAAATCTGTCATCACTTCCAGTGATTCTTCATCTGCTTCTTCCTGCAATTACAGCAACACCGGCTTCAATTCCTTACCTAAGTCTAATAATTTGCAGAAAAAACGGAATGGGTTGGGACAAGAATCTGTAACCAAGGCTGGTGTTGGAGGCCAGAAACCACCTAAGAAGACCAAAGCAGAGAACCCCACTTCAACTGGACATGCAAAGAGGAAGGAAAAGCTTGGGGAAAGAATTGCAGCATTACAACAGCTTGTTTCTCCCTTTGGCAAGACAGATACAGCTTCAGTGCTTCATGAGGCTATGGGGTATATAAGATTTCTACATGACCAAGTTCAAGTCCTGTGCTCCCCTTACCTGCAAAGTTTACCATCCTCACACCATCCATTTCAACATCATCCTGGGGACGGAGATAACAATGGAGAGGAAATTCAGAAGGACTTAAGGAGTAGGGGTCTCTGCCTAATCCCTGTGGGATTCACCGTACACGTGGCTAGTAGCAATGGTGCTGATTTTTGGTCACCTGTTTCAATAGGGAACAATATTTCACCATCAACTATGCAGTAG 1269 0.4303 MLPGCITIWSISILISLSGSSLTRGFVFSHFLHGGGGAKTLTDATCSTSTETSSNDNVLSMGTFLCCKMTTWVFVSDFKIGTCDINMVTNVSHTLCHLTFVALSFYKPSPFRFSFSQKPLFQNASTFLFQPLKLNRLHTISIPSSEHFFFLMEAKEEFEVDHLTTPTGTSFSQLLLGDDDDDDADGNALGLGVDQTYNLSNSTVFSLHNTPKMLCFGNYQNEGDLLLSETNVTPQKSVITSSDSSSASSCNYSNTGFNSLPKSNNLQKKRNGLGQESVTKAGVGGQKPPKKTKAENPTSTGHAKRKEKLGERIAALQQLVSPFGKTDTASVLHEAMGYIRFLHDQVQVLCSPYLQSLPSSHHPFQHHPGDGDNNGEEIQKDLRSRGLCLIPVGFTVHVASSNGADFWSPVSIGNNISPSTMQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03113 422 MobiDBLite consensus disorder prediction 258 274 - -
Rops6g03113 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 304 355 IPR036638 GO:0046983
Rops6g03113 422 FunFam Transcription factor bHLH113 286 356 - -
Rops6g03113 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Rops6g03113 422 CDD bHLH_AtbHLH_like 304 349 IPR045239 -
Rops6g03113 422 Gene3D - 302 357 IPR036638 GO:0046983
Rops6g03113 422 MobiDBLite consensus disorder prediction 258 307 - -
Rops6g03113 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 187 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03113 Rops-Chr6 54518216 54520897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03113 304 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 55.556 8.52e-36 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03113 - - gmx:100809317 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03113 6 54518216 54520897 Rops6g03113 6 54518216 54520897 ECH