Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03109 ATGGGAACTGAGCAATGTGAATTGTCTGAAAAATCACCTCAGATGGGCTCTGCATGTTTAGACAATGAACAAAGGGTGCTTGGTACTGTGTCAACCAGTTCTGTTATTGACGAAAATTCAAATCAAGTTTCTGCCAATATGACTGAGAATTCTGTTATTCTACTGCCTGCACCACCTCAACATCACTTAGAAAAGAGCTTTCAGACTGTAGAAGATTCGTGCCTTCAACAAAGTACCTCTGAACAAGTCTCCGTTCCTTTATCTAATGATAAATCAGAAAACAAATGTCAGACATTCCCTGAAAATGTTCAAAATGAACCTGTAGAATTAAGTGATGCAGTCGCTGGCTCTGTTGTTGTGGACCAAACACAATCAGTTCCTTTATCTAATGATAAATCAGAAAACAAATGTCAGACATTCCCTGAAAATGTTCAAAATGAACCTGTAGAAATAAGTGATGCAGTAACTGTAACTGGCTCTGTTGTTGCGGACCAAACACAATCAATTCCTGCTCAAGTGAACACGAGTTCTGTGAATGAACTGATGGATCCACCTTCTGATGATGTTGCGAAAAATATTAGTTCCGATTGTTCAGAAAGAAAGTCTAAAAGCTCAACTCCTTTGCGATTGAGGCACAGGGGTAAAAGTAACTCAAAATTATTGAAGAAGAAGTATATGCTAAGGTCTGTAGGAAGCAGTGACAGAGCTTTGCGGTCAAGGACAAGAGAAAAACCTAAAGAACCTGAACCAAATAGTAATTTGGTTGACGATAATAATGATGGAGTGAAGAGGAAAAGAGGGAGGAAGAAGAAAAAAATAAGAGGGGAGGGAATTACTGATCAATTTTCTAAAATAAGAGCTCACTTAAGATATTTATTGAACCGAATAAGCTACGAGCAAAACTTGATTGATGCTTATTCTGCCGAGGGCTGGAAAGGATACAGCATGGAAAAATTAAAGCCCGAGAAGGAGATTCAACGAGCTAAGTCTGAAATTCTTCGACGTAAATTGAAAATTAGGGATCTATTTCGAAATTTGGATTCATTGTGTGCTGAAGGAAGGCTTCCAGAATCTTTGTTTGATGCTGAGGGGGAGATTGACAGTGAGGATATATTCTGTGCAAAGTGCCAGTCCAAAGAGTTGACCACTAATAATGATATAATTCTCTGTGATGGTGCTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCATTGTTAACTGAAGACATTCCCCCTGGCGACGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATCAAAATTGTTAATGATTCCTTAGGAACAAAACTCGCTCTTAGTAACACCTGGGAGAGGGTTTTTCCTGAAGCAGCTGCAACTGCTGGAAATAATATGGATCACAACTTTGGACTTCCTTCTGACGATTCTGATGATGATGATTATAATCCTAATGGTCCAGAGGATGTGGAGGCTGAAGGAGGTGAGTCAAGTTCTGATGAATCTGAGTATGCCTCTGCTTCTGAGAAATTGGAGGATTCACACCGTGAGGATCAATACGCGGGCCTTCCTTCTGAAGACTCTGAGGATGATGATTTTGATCCTAATGCTCCAGATCTGGACAATAAAATCACGGAAGAAAGTTCAAGCTCTGATTTTACATCTGACTCTGAGGATCTCACTGCCGCAATTGAGGATGACACGTCCACTGGACAGGATGAAGATCTCATATCTGCATCGTTGGATGATGTTAAGAACTTCAAAGGTTCTAGCAAACAAAAACGTAAAGTTGGTAAGAAGCCATCTATAGCTGATGAACTGTCATCTTTACTAGAGCCAGATCCTGGCCAAGAGGGTTCCACTCCAGTTTCTGGGAAGAGAAATGTGGAAAGGTTGGACTACAAAAAACTGTATGATGAGACATACCAAAGTGAAACTAGTGATGATGAAGATTGGACTGCCAATGCTACTCTAAGTGGAAAAAAGAAACACGCCGGCAAAATGACTCCAGTGTCACCAAATGGAAACGCCTCAAATAATTCTAGACATAATCCTTGGAGGAACACCCATCAAAATAATGTTGAAAATACAAATAATTCGCCCACAAAATCACTTGAAGGCTGTGTGGAATCTGGTTCCAGGGATAAAAAACCTAGATCTTCAGCATACAAAAGACTTGGAGAAGATGTAGTTCAGAGACTTCACCAATCTTTTAAAGAAAACCAATATCCAGATCGAGCCACAAAAGAAAGCTTGGCACAAGAACTTGGACTCACTTATCAGCAGGTTGACAAATGGTTTGGCAATACTCGATGGAGCTTCCGGCATCATTCATCACACATGGCAACCAGTCCAGGTAGAAATGCTTCACAGCAGGCCACTGACAGCAGAGCTGAAAATAACGGGGAGATGGAATGTGAATTGGTAGTGTCCCAAGAGGTCAATGGAGAAAATTCAAGAACCCCAAGCTCCAAGAAAAGGAAGCGTTTGTCCGAACCCCAAGCATCTTAA 2502 0.4101 MGTEQCELSEKSPQMGSACLDNEQRVLGTVSTSSVIDENSNQVSANMTENSVILLPAPPQHHLEKSFQTVEDSCLQQSTSEQVSVPLSNDKSENKCQTFPENVQNEPVELSDAVAGSVVVDQTQSVPLSNDKSENKCQTFPENVQNEPVEISDAVTVTGSVVADQTQSIPAQVNTSSVNELMDPPSDDVAKNISSDCSERKSKSSTPLRLRHRGKSNSKLLKKKYMLRSVGSSDRALRSRTREKPKEPEPNSNLVDDNNDGVKRKRGRKKKKIRGEGITDQFSKIRAHLRYLLNRISYEQNLIDAYSAEGWKGYSMEKLKPEKEIQRAKSEILRRKLKIRDLFRNLDSLCAEGRLPESLFDAEGEIDSEDIFCAKCQSKELTTNNDIILCDGACDRGFHQLCLDPPLLTEDIPPGDEGWLCPGCDCKDDCIKIVNDSLGTKLALSNTWERVFPEAAATAGNNMDHNFGLPSDDSDDDDYNPNGPEDVEAEGGESSSDESEYASASEKLEDSHREDQYAGLPSEDSEDDDFDPNAPDLDNKITEESSSSDFTSDSEDLTAAIEDDTSTGQDEDLISASLDDVKNFKGSSKQKRKVGKKPSIADELSSLLEPDPGQEGSTPVSGKRNVERLDYKKLYDETYQSETSDDEDWTANATLSGKKKHAGKMTPVSPNGNASNNSRHNPWRNTHQNNVENTNNSPTKSLEGCVESGSRDKKPRSSAYKRLGEDVVQRLHQSFKENQYPDRATKESLAQELGLTYQQVDKWFGNTRWSFRHHSSHMATSPGRNASQQATDSRAENNGEMECELVVSQEVNGENSRTPSSKKRKRLSEPQAS* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03109 833 MobiDBLite consensus disorder prediction 459 571 - -
Rops6g03109 833 MobiDBLite consensus disorder prediction 817 833 - -
Rops6g03109 833 CDD homeodomain 713 775 IPR001356 GO:0003677
Rops6g03109 833 ProSiteProfiles 'Homeobox' domain profile. 714 774 IPR001356 GO:0003677
Rops6g03109 833 MobiDBLite consensus disorder prediction 774 796 - -
Rops6g03109 833 Gene3D - 716 786 - -
Rops6g03109 833 ProSiteProfiles Zinc finger PHD-type profile. 370 427 IPR019787 -
Rops6g03109 833 FunFam Homeobox protein HAT3.1 353 431 - -
Rops6g03109 833 CDD PHD_PRHA_like 372 424 IPR045876 -
Rops6g03109 833 SMART PHD_3 372 425 IPR001965 -
Rops6g03109 833 MobiDBLite consensus disorder prediction 706 724 - -
Rops6g03109 833 MobiDBLite consensus disorder prediction 235 263 - -
Rops6g03109 833 FunFam Homeobox protein HAT3.1 716 786 - -
Rops6g03109 833 SUPERFAMILY FYVE/PHD zinc finger 363 431 IPR011011 -
Rops6g03109 833 MobiDBLite consensus disorder prediction 206 222 - -
Rops6g03109 833 MobiDBLite consensus disorder prediction 774 833 - -
Rops6g03109 833 MobiDBLite consensus disorder prediction 625 640 - -
Rops6g03109 833 Pfam Homeodomain 725 770 IPR001356 GO:0003677
Rops6g03109 833 SMART HOX_1 712 778 IPR001356 GO:0003677
Rops6g03109 833 MobiDBLite consensus disorder prediction 539 555 - -
Rops6g03109 833 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 137 815 - -
Rops6g03109 833 MobiDBLite consensus disorder prediction 500 520 - -
Rops6g03109 833 MobiDBLite consensus disorder prediction 585 724 - -
Rops6g03109 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 365 421 IPR013083 -
Rops6g03109 833 Pfam PHD-finger 372 427 IPR019787 -
Rops6g03109 833 MobiDBLite consensus disorder prediction 471 495 - -
Rops6g03109 833 MobiDBLite consensus disorder prediction 668 704 - -
Rops6g03109 833 ProSitePatterns Zinc finger PHD-type signature. 373 424 IPR019786 -
Rops6g03109 833 MobiDBLite consensus disorder prediction 172 275 - -
Rops6g03109 833 SUPERFAMILY Homeodomain-like 719 777 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03109 Rops-Chr6 54450435 54459180 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03109 230 771 Homeobox Transcription Factor Family AT3G19510 47.295 1.50e-132 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Rops6g03109 PHD 7.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03109 - - gmx:100306715 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03109 6 54450435 54459180 Rops6g03109 6 54450435 54459180 ECH