Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03101 ATGCAAGCTGGAGGACGCATAATCTACTCTGGCCCACTTGGAGAGCACTCAAAGGGTAAGACTGATTACCAAGCTAGGATTCGGTTGATTAATCAGGACAAGAACAAGTACAACACCCCCAAATATAGATTTGTGGTTCGATTTACAAACAAGGATATCATTGCACAAATAGTATCTGCTAGCATTGCTAGTGATATTGTTCTCGCAGCAGCTTATGCAAATGAACTGCCACGCTATGGTCTTGAAGTAGGCCTTACCAACTATGCAGCAGCTTACTGCACTGGACTCTTGTTGGCCCGTCGTGTCCTTAAAATGCTTGAAATGGATGAGGACTATGATGAGGGGAATGTTGAGGCTTGGCCACTTGCCTTCCTCAACCAAAAACAATTGGTGAAGTTTGCTGAGAATTATATGCATACCCGAACTTATAAAAGCCTTCCTCAACCAAAAACAATTGGTGAAGTTTGCTGA 471 0.431 MQAGGRIIYSGPLGEHSKGKTDYQARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSASIASDIVLAAAYANELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDEDYDEGNVEAWPLAFLNQKQLVKFAENYMHTRTYKSLPQPKTIGEVC* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03101 156 PANTHER RIBOSOMAL PROTEIN L5-RELATED 18 119 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Rops6g03101 156 SUPERFAMILY Translational machinery components 17 105 - -
Rops6g03101 156 CDD Ribosomal_L18_L5e 34 105 - -
Rops6g03101 156 PRINTS Ribosomal protein L5 signature 36 55 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Rops6g03101 156 PRINTS Ribosomal protein L5 signature 13 32 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Rops6g03101 156 PRINTS Ribosomal protein L5 signature 77 97 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Rops6g03101 156 Gene3D - 14 139 - -
Rops6g03101 156 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 17 114 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03101 Rops-Chr6 54240428 54243468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03101 19 124 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 85.849 2.47e-59 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03101 K02932 - pda:103708588 176.407