Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03098 ATGGCGAAACGAGAAAACTCACCCTTTAGACCTCACGCCGTGGACGACTTTTACTTCTCCTCGTCTGATGACGAGTATGTTCAGGAGTTGAGGTTTCAAGAGATCTTCATGTCTCTATCACGTGGCAATCAAACCTCACAAACACCTGTGGCGCCAAGCTTACAAAGACCTATGACTCAACAAGAAAACTCACTCTTTATCTTTAGTCCTCACGCCGTGGACGGTGACAATGGAGCTGACCAGGTCTCCCTGTCTTATGACAAGTATGTTCCGGAGTTGCAATTTCAGGAGACCCTCATGGCCTCTCGCATCATGGCCTCTTCGTTGTTACCACCACGACCACGACCACCATCACCTTTTCCCTACTTAGCATCGCACGGCAATCAAAGCTCACAAACACCTGTGGCGCCAAGCTTACAAAGACCTATGACTCAACAAAAAAACTCACTCTTTAGTTTTCACGCCATGGAAGGTGACAAAGGTGTTGGCCATGTCTTCCTGTCTGATGACAAGTATGTCCCGGAGTTGCAATTTCAGGAGACCCTCATGGCCTCTCGCACCATGGCCTCTTCGTTGTTACCACCACCACCATCACCTTTTCCCTGCTTAGCATCGCACGGCAATCAAAGCTCACAAACACCTGTGGTGCCAAGCTTACAAACACGTATGACTCAACAAGAAAACTCACTCTTTAGTTTTCACCCCACGGACGGTGACAAAGGAGCTGGCCATGTCTCCCAGTCTGATGACAAGTATGTCCCGGAGTTACAATTTCAGGAGACCCTCACGGCCTCTTCGTTGTTACCACCACCACCATCACCTTTTCCCTGCTTAGCATCTTCATCAAAAACCATTGAAGTTATCCTTTCCCCCATGAAGAAGAGGAAGGTGGGGTTGACCACTGTAAAAAAAGCAGGTGAATCCTCAGTAATCATATGCACAATCTGTGCAAAAACGGAAAGGAGGCATGAGATGTTCAGTAACAAGAGATGTGACCATTCCTTCTGCTCCGACTGTATCACCAAACAAGTGGCCACAAAGATTCAAGACCCCTTAACCGTTGTTCCTTGTCTTGGTTTGAACTTTGAGGGTGTGTCGTTGTTACCACCACGAGCACCACCACCATCACCTTTTCCCTGCTTAGCATCTTCATCAAAAACCATTGAAGTTATCCTTTCCCCCATGAAGAAGAGGAAGGTGGGGTTGACCACTGTAAAAAAAGCAGGTGAATCCTCAGTAATCATATGCACAATCTGTGCAAAAACGGAAAGGAGGCATGAGATGTTCAGTAACAAGAGATGTGACCATTCCTTCTGCTCCGACTGTATCACCAAACAAGTGGCCACAAAGATTCAAGACCCCTTAACCGTTGTTCCTTGTCTTGGTTTGAACTTTGAGGGTGTGTCGTTGTTACCACCACGAGCACCACCACCATCACCTTTTCCCTGCTTAGCATCTTCATCAAAAGCCATTGAAGTTAGCCTTTCCCCCATGAGGAAGAGGAAGGTAGTCATCATATGCAAAATCTGTGGAAAAAGGAAAAGGAGGGATGAGATGCTCAGTAACAAGAGATGTGACCATTCCTTCTGCTCCGACTGTATCACCAAACAAGTGGCCACAAAGATACAAGACCCCATAACCGTTGTTCCTTGTCTTGGTTTGAACTGTGAGGGTGTGTCGTTGTTACCACCACGAGCACCACCACCATCACCTTTTCCCTGCTTAGCATCTTCATCAAAAGCCATTGAAGTTAGCCTTTCCCCCATAAAGAAGAGGAAGGTAGGGTTGACCACTGTAAAAAAAGCAGGTGAATCCTCAGTCATCATATGCAAAATCTGTGCAGAAACGAAAAGGAGGGATGAGATGTTCAGTAACATGAGATGTGACCATTCCTTCTGCTCCGACTGTATCACCAAACAAGTGGCCACAAAGATACAAGACGGCATAACTGTTGTTCCTTGTCTTGGTTTGAACTGTAAGGGTGTGTTGGAGCTTGATGCTTGCAGGTCAATGCTCCCAAAAGACCTTATTGATAGGTGGGATGATGCAATGTGTGAGGCTTTTTTACTAACTGCTAAGAAATTCTATTGCCCCTTTAAGGACTGTTCTGCTATGATGCTGGATGACAAGGAAGAAGGGAAAGATATTACGGAGTCTGAGTGCCCATTTTGCCATAGACTTTTCTGTGCAAGGTGTCATGTTCCTTGGCATCATGGGATTGGCTGTGAGGAGTTCCAGAAACTCAATAAGGATGAGGCAGGGAGGGAGGATCTCCTTGTTAGAGAACTTGCTAATGAGAAGAAATGGAGCAGGTGTCCCAAATGCAAGTTCTATGTTGAAAAGACTGGAGGGTGTTTGCATATCACATGCAGGTGCAAATTTCAGTTTTGCTATGCTTGTGGAAAACAATGGAGCTTAATTCATAGTTGCAGCAAAAGAAATTAG 2445 0.4589 MAKRENSPFRPHAVDDFYFSSSDDEYVQELRFQEIFMSLSRGNQTSQTPVAPSLQRPMTQQENSLFIFSPHAVDGDNGADQVSLSYDKYVPELQFQETLMASRIMASSLLPPRPRPPSPFPYLASHGNQSSQTPVAPSLQRPMTQQKNSLFSFHAMEGDKGVGHVFLSDDKYVPELQFQETLMASRTMASSLLPPPPSPFPCLASHGNQSSQTPVVPSLQTRMTQQENSLFSFHPTDGDKGAGHVSQSDDKYVPELQFQETLTASSLLPPPPSPFPCLASSSKTIEVILSPMKKRKVGLTTVKKAGESSVIICTICAKTERRHEMFSNKRCDHSFCSDCITKQVATKIQDPLTVVPCLGLNFEGVSLLPPRAPPPSPFPCLASSSKTIEVILSPMKKRKVGLTTVKKAGESSVIICTICAKTERRHEMFSNKRCDHSFCSDCITKQVATKIQDPLTVVPCLGLNFEGVSLLPPRAPPPSPFPCLASSSKAIEVSLSPMRKRKVVIICKICGKRKRRDEMLSNKRCDHSFCSDCITKQVATKIQDPITVVPCLGLNCEGVSLLPPRAPPPSPFPCLASSSKAIEVSLSPIKKRKVGLTTVKKAGESSVIICKICAETKRRDEMFSNMRCDHSFCSDCITKQVATKIQDGITVVPCLGLNCKGVLELDACRSMLPKDLIDRWDDAMCEAFLLTAKKFYCPFKDCSAMMLDDKEEGKDITESECPFCHRLFCARCHVPWHHGIGCEEFQKLNKDEAGREDLLVRELANEKKWSRCPKCKFYVEKTGGCLHITCRCKFQFCYACGKQWSLIHSCSKRN* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03098 814 SMART ibrneu5 756 810 IPR002867 GO:0008270
Rops6g03098 814 SMART ibrneu5 678 742 IPR002867 GO:0008270
Rops6g03098 814 SUPERFAMILY RING/U-box 505 564 - -
Rops6g03098 814 ProSitePatterns Zinc finger RING-type signature. 525 534 IPR017907 -
Rops6g03098 814 SMART ring_2 313 357 IPR001841 -
Rops6g03098 814 SMART ring_2 507 551 IPR001841 -
Rops6g03098 814 SMART ring_2 610 724 IPR001841 -
Rops6g03098 814 SMART ring_2 416 460 IPR001841 -
Rops6g03098 814 SUPERFAMILY RING/U-box 410 460 - -
Rops6g03098 814 ProSitePatterns Zinc finger RING-type signature. 331 340 IPR017907 -
Rops6g03098 814 SUPERFAMILY RING/U-box 756 810 - -
Rops6g03098 814 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 214 358 IPR031127 GO:0004842|GO:0016567
Rops6g03098 814 MobiDBLite consensus disorder prediction 123 143 - -
Rops6g03098 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 409 474 IPR013083 -
Rops6g03098 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 373 IPR013083 -
Rops6g03098 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 688 IPR013083 -
Rops6g03098 814 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 566 IPR013083 -
Rops6g03098 814 CDD Rcat_RBR_unk 768 804 - -
Rops6g03098 814 ProSitePatterns Zinc finger RING-type signature. 434 443 IPR017907 -
Rops6g03098 814 Pfam IBR domain, a half RING-finger domain 679 742 IPR002867 GO:0008270
Rops6g03098 814 Pfam IBR domain, a half RING-finger domain 761 806 IPR002867 GO:0008270
Rops6g03098 814 Gene3D - 739 814 - -
Rops6g03098 814 SUPERFAMILY RING/U-box 604 687 - -
Rops6g03098 814 MobiDBLite consensus disorder prediction 110 143 - -
Rops6g03098 814 FunFam RBR-type E3 ubiquitin transferase 605 691 - -
Rops6g03098 814 FunFam RBR-type E3 ubiquitin transferase 744 814 - -
Rops6g03098 814 CDD BRcat_RBR_unk 692 745 - -
Rops6g03098 814 SUPERFAMILY RING/U-box 682 747 - -
Rops6g03098 814 ProSiteProfiles TRIAD supradomain profile. 606 814 IPR044066 -
Rops6g03098 814 ProSitePatterns Zinc finger RING-type signature. 628 637 IPR017907 -
Rops6g03098 814 SUPERFAMILY RING/U-box 307 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03098 Rops-Chr6 54182381 54185475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03098 557 801 C3H Transcription Factor Family AT2G19610 29.845 1.27e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03098 K11975 - cave:132186569 323.939