Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops6g03090 | ATGACGAGCGCTTCGGAGTTATTTTACATCAGGAGGCATCGATTAGGACGAAATGCTCTCGATCTAGGGTTCGATTCCTCTCCTGCTCCAAATCTCCATCAACACCATCGCTTTCACGACTCCGACGGTGATGATTCTCCCCGTCTCCGCCGTCACTACAACGTCCGCCGCCTCCGTCATCAGGAGCGCTTGTCTGATAGAATTGATGGGAGGTATCGTCGGTCTTTCTTCCATGAAAGCGTTGATTCTGCAGAAAATGTGAGAGGCGCTATTAGAGCGAGTGACGGTGACAGATTACCCGATGGTGTGCTACTTGCTCGTGCAAGACTCCTTCAGAGGTTGAGAGGGGAGCCTCTTTCTAGAAACAGGCAATATGGTATAGATCCAATGGATGAGGATCAAGAAAGTGAATTATCAAGTGAAGTTCCAACTGGGGATTCTTTAGTAACTGACTTGACTTCTCAAATGGGAAGGTCCCAGCTCTTGCAAGAACTAAACGAAAAGCCACCTGGACTCACTCAGGAGGCCCTGGACTGTTTGCAACTGGAAGTTTATAGCAGCAGCAGGGAGACAGGATTAGAATCCAGGGTACTGCAGGATTGTGGCATCTGCTTGGAATCTTTCACGGATGGAGATGAGCTGATACATTTGCCATGTGGACATAAATTTCACTCTGCTTGTTTGGATCCTTGGATTCGCTGTTGTGGAGACTGTCCATACTGTAGAAGATGTATAGTTGTAAATAGTCACGTTCCGAAAAATGAGGCTGAGTAG | 774 | 0.4755 | MTSASELFYIRRHRLGRNALDLGFDSSPAPNLHQHHRFHDSDGDDSPRLRRHYNVRRLRHQERLSDRIDGRYRRSFFHESVDSAENVRGAIRASDGDRLPDGVLLARARLLQRLRGEPLSRNRQYGIDPMDEDQESELSSEVPTGDSLVTDLTSQMGRSQLLQELNEKPPGLTQEALDCLQLEVYSSSRETGLESRVLQDCGICLESFTDGDELIHLPCGHKFHSACLDPWIRCCGDCPYCRRCIVVNSHVPKNEAE* | 258 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops6g03090 | 257 | SMART | ring_2 | 201 | 241 | IPR001841 | - | |
| Rops6g03090 | 257 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 246 | IPR013083 | - | |
| Rops6g03090 | 257 | CDD | RING-H2_PA-TM-RING | 200 | 242 | - | - | |
| Rops6g03090 | 257 | MobiDBLite | consensus disorder prediction | 26 | 48 | - | - | |
| Rops6g03090 | 257 | SUPERFAMILY | RING/U-box | 200 | 248 | - | - | |
| Rops6g03090 | 257 | PANTHER | SI:CH211-59O9.10 | 40 | 247 | - | - | |
| Rops6g03090 | 257 | MobiDBLite | consensus disorder prediction | 32 | 48 | - | - | |
| Rops6g03090 | 257 | Pfam | Ring finger domain | 200 | 242 | IPR001841 | - | |
| Rops6g03090 | 257 | MobiDBLite | consensus disorder prediction | 122 | 145 | - | - | |
| Rops6g03090 | 257 | ProSiteProfiles | Zinc finger RING-type profile. | 201 | 242 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops6g03090 | Rops-Chr6 | 54062074 | 54065019 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops6g03090 | 1 | 246 | C3H Transcription Factor Family | AT1G49850 | 41.313 | 1.24e-42 | 144 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops6g03090 | - | - | gmx:548042 | 344.354 |