Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03086 ATGTCGTGCAGTGTGGGGAACAGGTGTAACTGGCTGCAGCTCAAGCTCAATTTATATTGGAGCAGATATTTACCGCAGAAGGATGGTAGTGCAGTGAGAGGAAATATGGCTGATGCTTTAAATGAGGATCAACGCAGGGTTGGTGCAGTTGTTGTTTCCCCTAAGAGGGACCTTGCTTGGTTTGAAGGGGACAGAGATTTTGAGCCACACAACGGCATTGAGTTTGAATCTCATGAAGCAGCATATTCATTTTATCAGGAATATGCCAAATCAATGGGATTCACCACTTCAATAAAAAACAGCAGACGCTCAAAGAAAACAAAAGAATTCATTGATGCCAAATTTGCGTGCTCTAGGTATGGAGTTACACCTGAGTCTGACAGTGGGAGCAGTAGAAGACCAAGTGTAAAGAAGACAGATTGCAAAGCTTGCATGCATGTAAAGAGAAGGCCGGATGGAAAGTGGATCATTCATGAATTTATAAAGGAACACAATCATGAACTTTTACCAGCTTTGGCATATCATTTTCGGATTCATAGAAATGTGAAATTAGCTGAAAAGAATAATATTGATATCTTGCATGCCGTAAGTGAACGTACCAGAAAGATGTATGTTGAAATGTCCAGGCAATCTGGTGGCTGTCAAAACATTGGGTCTCTCTTGGGTGATGTAAATTATCAGTTTGACAGAGGCCAGTATTTGGCTTTGGACGAGGGAGATGCCCAAATTATGCTTGAGTATTTTAAGCACATTCAGAAAGAGAATCCCAACTTCTTCTATTCTCTAGATTTAAATGAAGAACAACGTTTGAGGAATCTCTTCTGGATTGATGCAAAAAGTATAAATGATTATCTCAGTTTTAACGATGTAGTTTCATTTGATACCACCTACATTAAAAGCAATGATAAGTTGCCATTTGCTCCTTTTGTTGGGGTGAATCATCACTCTCAACCTATGTTGCTTGGATGTGCATTGCTTGCAGATGAGACTAAACCAACATTTGTTTGGTTATTGAAGACATGGCTTAGAGCAATGGGTGGGCAAGCTCCCAAAGTTATAATCACTGATCAAGACAAAGCCTTGAAGGCAGCAATTGAAGAAGTCCTCCCAAATGTACGACATTGTTATTCTCTTTGGCACATACTGGAAAGGATTCCTGAAAATCTGTCTTTTGTGATCAAGCAGTATAAGAACTTCTTGCCAAAGTTTAACAAGTGCATTTTTAAGTCATGGACAGATGAACAGTTCGACATGAGATGGTGGAAAATGGTCACTAGATTTGAACTCCATGATGATATATGGTTTCAGTCATTGTATGAAGACCGGAAAAAGTGGGTGCCAACTTACATGGTGGATACTTTTTTAGCTGGAATGTCTACACCTCAACGTTCTGAAAGTATGAACTCTTTCTTTGACAAATATATTCATAAGAAAATCACCCTTAAAGAGTTTGTGAAACAATATGGGATAATTCTTCAGAATAGATACGATGAGGAAGCCATTGCAGATTTTGATACATTGCACAAACAGCCCGCACTTAAATCTCCTTCACCTTGGGAAAAACAAATGTCAACAGTATATACACATGCAATATTTAAGAAATTCCAGGTTGAAGTGTTGGGTGTGGCTGGTTGTCAATCTAGGATAGAGGTTGGAGATGGAAAATTTATGATTCAAGATTATGAGAAGGAGGAAGAGTTTTTGGTAACTTGGAATGAGTTGACTTCAGAGGTCTCTTGCTTCTGTCGATTGTTTGAATATAAAGGTTTCCTTTGCAGGCATGCGTTGAGTGTTCTCCAACGTTGTGGTTGTTCAAGTGTTCCATCTCATTATATCATGAAGAGGTGGACCAAAGATGCCAAAATTAGGGAATCCATGTCAGATGGGACAAGAAGGATACAAACAAGGGTGCAGCGTTATAATGACTTGTGTAAACGAGCTATTGAGTTGAGTGGAGAAGGATCATTATCTGAAGAAAGTTACAATATTGTTTTCCGTGCACTTGTTGATGCCCTGAAGAACTGTGTGCATGTGAATAATTCTAACAACAATGGTGCAGAACCTAGTAACAGTACTTATGGTCTTCGTGAAGCAGAAGAAAATCAGGGTGCCCTTGCTTCGAAACCAAGTAAGAAGAGGAACACAGCTAGAAAAAGAAAGGTGCAATTAGAGCAGGATGTTATACTTGTTGATGCTCAAGATAGCCTGCAGCAAATGGATAATCTTAGCTCGGATGCAATGACCCTTAATGGATATTATGGTACCCAGCAGAATGTGCAAGGACTGCAGGTACAGTTGAACTTAATGGAGCCGCCTCATGATGGTTACTATGTTAATCAACAGAGCATGCAAGGCCTGGGTCCATTGAATTCTATGGCTCCAAGCCATGATGGGTTTTTTGGAACACAACAAAGCATTCATGGGCTGGGAGGGCAATTGGAATTTCGTCCAGCAACTACTTTCGGATATAGCCTTCAGGATGAGCCTGATCCACAGTTCCATGGCAATAGTTCAAGAAATACTTAG 2526 0.4002 MSCSVGNRCNWLQLKLNLYWSRYLPQKDGSAVRGNMADALNEDQRRVGAVVVSPKRDLAWFEGDRDFEPHNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPESDSGSSRRPSVKKTDCKACMHVKRRPDGKWIIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRKMYVEMSRQSGGCQNIGSLLGDVNYQFDRGQYLALDEGDAQIMLEYFKHIQKENPNFFYSLDLNEEQRLRNLFWIDAKSINDYLSFNDVVSFDTTYIKSNDKLPFAPFVGVNHHSQPMLLGCALLADETKPTFVWLLKTWLRAMGGQAPKVIITDQDKALKAAIEEVLPNVRHCYSLWHILERIPENLSFVIKQYKNFLPKFNKCIFKSWTDEQFDMRWWKMVTRFELHDDIWFQSLYEDRKKWVPTYMVDTFLAGMSTPQRSESMNSFFDKYIHKKITLKEFVKQYGIILQNRYDEEAIADFDTLHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVAGCQSRIEVGDGKFMIQDYEKEEEFLVTWNELTSEVSCFCRLFEYKGFLCRHALSVLQRCGCSSVPSHYIMKRWTKDAKIRESMSDGTRRIQTRVQRYNDLCKRAIELSGEGSLSEESYNIVFRALVDALKNCVHVNNSNNNGAEPSNSTYGLREAEENQGALASKPSKKRNTARKRKVQLEQDVILVDAQDSLQQMDNLSSDAMTLNGYYGTQQNVQGLQVQLNLMEPPHDGYYVNQQSMQGLGPLNSMAPSHDGFFGTQQSIHGLGGQLEFRPATTFGYSLQDEPDPQFHGNSSRNT* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03086 841 Pfam MULE transposase domain 290 383 IPR018289 -
Rops6g03086 841 ProSiteProfiles Zinc finger SWIM-type profile. 567 603 IPR007527 GO:0008270
Rops6g03086 841 SMART 26again6 578 605 IPR006564 GO:0008270
Rops6g03086 841 Pfam FAR1 DNA-binding domain 83 170 IPR004330 -
Rops6g03086 841 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 676 IPR031052 GO:0006355
Rops6g03086 841 MobiDBLite consensus disorder prediction 679 697 - -
Rops6g03086 841 Pfam SWIM zinc finger 569 602 IPR007527 GO:0008270
Rops6g03086 841 MobiDBLite consensus disorder prediction 822 841 - -
Rops6g03086 841 MobiDBLite consensus disorder prediction 679 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03086 Rops-Chr6 54000239 54006080 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops6g03086 MULE 1.7e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03086 - - gmx:100805377 1489.17