Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03079 ATGAGCTGCAACGGTTGTCGTGTCCTCCGAAAGGGTTGCAGTGATGATTGCATGCTACGACATTGCCTACTTTGGATAGAAAACCCACAAGCTCAGGCTAACGCCACCGTCTTTGTGGCCAAGTTCTTTGGCCGTGCCACCCTCATGTCTTTCCTTTCCTCCGTAGCCCACCACCAAAGATCTGTTCTGTTTCAATCACTTCTATTTGAAGCTGTGGGGCGTACCATAAATCCAGTGAATGGAGCAGTGGGGCTGTTATGGACAGGGAACTGGCACTTATGCCAATTGGGTGTGGAGAAAGTGCTTCGAGGTGGTGGTGCTGTGTTGACCCCACTACCTCAGTTTTTGGGTGTGGATGAGAGTGAAGCCCTTCTAGATTCTTCTACTCATCATCATCACCAAGTAATGGGATCAAATATGTTCAAGAATCATGAAGCAGGTTTTATGTTTGAGAGTGAAAAGAAACAACGTGCGGGGACACCGTCTGAGGAATCGGACACATCCACGTTGGGAAGTGGAGCTGAGGATTGCGCTTCTCAAAGTGAAAGGAAGCTCCTTCCACTATTCTTTTGA 573 0.4817 MSCNGCRVLRKGCSDDCMLRHCLLWIENPQAQANATVFVAKFFGRATLMSFLSSVAHHQRSVLFQSLLFEAVGRTINPVNGAVGLLWTGNWHLCQLGVEKVLRGGGAVLTPLPQFLGVDESEALLDSSTHHHHQVMGSNMFKNHEAGFMFESEKKQRAGTPSEESDTSTLGSGAEDCASQSERKLLPLFF* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03079 190 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Rops6g03079 190 MobiDBLite consensus disorder prediction 162 176 - -
Rops6g03079 190 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Rops6g03079 190 MobiDBLite consensus disorder prediction 153 179 - -
Rops6g03079 190 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03079 Rops-Chr6 53937524 53939118 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03079 1 116 AS2 family AT3G49940 70.690 1.36e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops6g03079 LOB 9.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03079 - - lja:Lj5g3v2099760.1 254.988