Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03076 ATGGCTTTGGAGGCTATGAATTCTCCTACAGCACCCACCAATCCCTTCTCTCGTTACCAAGAAGAGGAAGAGGAAGAGGTTGACCTTCACTGGCCCAAGGGGAAACGCTCAAAACGACCTCGTATTGAGAATCCAACAACAGAAGAAGAGTATCTAGCTCTCTGTCTCATCATGCTCGCACAAAGTGGAAACAAAAACAATAACCACCACCACAGCAACACCTCTCACCGTGAAACCGAACCATCTTCTTCACACCAACAACAACTGCCGTCGCTGCCGCTGGTGAAGCTGAATCACCGATGTACTGTTTGTAACAAAGCCTTTTCTTCTTATCAAGCACTCGGTGGCCACAAGGCCAGTCATCGCAAGTCTTCAAATTCAGAAGCCGTCAACGACAACAACAAGTACGTCTCCACCTCCACCGCCACAGGTGGAAAGATGCACGAGTGTTCCATCTGTCACAAGACTTTCCCTACGGGTCAAGCCCTCGGTGGCCACAAGCGCTGTCACTACGAAGGTGGCAACAACAGCAGCACCAATAACAACAGTGGCCTGACATCTTCTGACGGCGGAGCCTCAGCCTCTGCCTCCGCTCATAGCCACCATGGCTTTGACCTCAACCTGCCAGCGCCACTCACCGAGTTCTGGCCGCCGGTGAAGTTCGGCGGTGGTGACTCGAAGAAGAATATTGCTGGAAACGGTGAACTTGAGGTGGAAAGCCCTTTGCCGGTAACAGCCAAGAGGGCGCGTTTGTTTGATGATGATGAAACGGTGTAG 777 0.5187 MALEAMNSPTAPTNPFSRYQEEEEEEVDLHWPKGKRSKRPRIENPTTEEEYLALCLIMLAQSGNKNNNHHHSNTSHRETEPSSSHQQQLPSLPLVKLNHRCTVCNKAFSSYQALGGHKASHRKSSNSEAVNDNNKYVSTSTATGGKMHECSICHKTFPTGQALGGHKRCHYEGGNNSSTNNNSGLTSSDGGASASASAHSHHGFDLNLPAPLTEFWPPVKFGGGDSKKNIAGNGELEVESPLPVTAKRARLFDDDETV* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03076 258 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 26 210 IPR044653 GO:0003700
Rops6g03076 258 Gene3D Classic Zinc Finger 96 170 - -
Rops6g03076 258 SMART c2h2final6 99 121 IPR013087 -
Rops6g03076 258 SMART c2h2final6 148 170 IPR013087 -
Rops6g03076 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 148 170 IPR013087 -
Rops6g03076 258 MobiDBLite consensus disorder prediction 178 195 - -
Rops6g03076 258 MobiDBLite consensus disorder prediction 1 44 - -
Rops6g03076 258 MobiDBLite consensus disorder prediction 18 44 - -
Rops6g03076 258 MobiDBLite consensus disorder prediction 63 89 - -
Rops6g03076 258 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Rops6g03076 258 Pfam C2H2-type zinc finger 148 171 - -
Rops6g03076 258 Pfam C2H2-type zinc finger 99 123 - -
Rops6g03076 258 ProSitePatterns Zinc finger C2H2 type domain signature. 150 170 IPR013087 -
Rops6g03076 258 MobiDBLite consensus disorder prediction 126 141 - -
Rops6g03076 258 SUPERFAMILY beta-beta-alpha zinc fingers 99 170 IPR036236 -
Rops6g03076 258 MobiDBLite consensus disorder prediction 117 141 - -
Rops6g03076 258 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Rops6g03076 258 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03076 Rops-Chr6 53915667 53916749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03076 1 251 C2H2 Transcription Factor Family AT1G27730 41.667 1.27e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g03076 zf-C2H2_6 3.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03076 - - vum:124819975 279.641