Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03073 ATGGAACCTGCTCAGTTGATTTCTGAAGAATGGGGTTCTCTTAGTGGACTGTACACAGCTGAGGAAGCTGACTTCATGGCTCAGTTGCTTGGTGATAACCATTCAGTTGTCACTGAGAAGTACTGTGGATCTACTAGTTTTGGCAAAGGAACCAATAGCAATTCATGTTCTCCTTCAAAAGTTGCAAATACTAATTTTCTCTGTTTCTCCCAAGGGAATAGCTCCAGCACTGACAGTTGTAATATCTTGTCCACCACAACCTGTGATCCAGCAACAAACATTGACTCCTTGTCCATGTTTTTTGGCTTGGGAGATGCCAAATTTAGCCCAAATAGTTTTCAATGGAATGACAACTTAAGCCAACAGATAAATGAAAGCATTGAAGAATGGTCAGTTCTAGACCCAGGGAAACTGGTTCTTGCTGACAATAATTTGCAGGCTAAGAGGGACTATGAAATGATGATGGTTTCTGAACCAACAGAAGAGGACACAAGTAGAAACCTGGACAACCCAGCAAAAAGATTCAGGAGCTCAAAAGACACTGCAGCTCCTAATTTACATGGAAAATCAAGAGCAATCAGTGGTACTGCTACTGATGCACAAAGCATATATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAAACTTGTCCCTAACGGAACTAAGGTGGATATCAGTACCATGCTTGAGGAAGCTGTCCAATACGTGAAGCTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTGTGGATGTACGCTCCAATTGCTTACAATGGCATAAACATTGGATTAGACCTCAGTATTTCTCCAACCAAAGGAAGATGA 849 0.4099 MEPAQLISEEWGSLSGLYTAEEADFMAQLLGDNHSVVTEKYCGSTSFGKGTNSNSCSPSKVANTNFLCFSQGNSSSTDSCNILSTTTCDPATNIDSLSMFFGLGDAKFSPNSFQWNDNLSQQINESIEEWSVLDPGKLVLADNNLQAKRDYEMMMVSEPTEEDTSRNLDNPAKRFRSSKDTAAPNLHGKSRAISGTATDAQSIYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVQYVKLLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSISPTKGR* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03073 282 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 268 - -
Rops6g03073 282 MobiDBLite consensus disorder prediction 162 176 - -
Rops6g03073 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 196 245 IPR011598 GO:0046983
Rops6g03073 282 Pfam Helix-loop-helix DNA-binding domain 206 246 IPR011598 GO:0046983
Rops6g03073 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 261 IPR036638 GO:0046983
Rops6g03073 282 SMART finulus 202 251 IPR011598 GO:0046983
Rops6g03073 282 CDD bHLH_AtIND_like 197 259 - -
Rops6g03073 282 Gene3D - 197 254 IPR036638 GO:0046983
Rops6g03073 282 FunFam Basic helix-loop-helix transcription factor 197 254 - -
Rops6g03073 282 MobiDBLite consensus disorder prediction 157 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03073 Rops-Chr6 53886276 53887441 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03073 162 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 73.874 8.43e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g03073 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03073 - - tpra:123881860 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02467 1 47735226 47736753 Rops6g03073 6 53886276 53887441 PCT