Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03072 ATGGATCCTGTTGAGCAAACTTCTGAAGAATGGAGTTCTCTTAGTGGATTGTACACAGCTGAGGAAGCTGAATTCATGAGCCAGTTGCTTGGTAACTGCTCAGTTCCCGAGAACCTATATGGAAATTCCAATTTGGAAATTCCATCTACATTATGGCCTGGTCATGAATCAACAATAGTGACCGTGACAGGCATCAATAGCAGTTCATATTTTCCTTCAAATGCTGATAATAGTAATGCTGATTTCCTTCGTTTTTTAAAAGGAAGCAGCTCCATTGCTGATAGTAGCAATATATTTTCTGCTACAAGTGGTGGCAACCGCTGCTTGAATGATCCAGTAGCTAACATTGCCTACATGTCCATGGAGGATGCCAAATTCAACCCATATAGTGTTCAAGGAAATGACAGCCAACACATGAATGGAAACACTGATGAAGAGATAGCTTTAGAGGTTATTGGTGACAAGAATTTGCTGGCTCACAAGGAATGTGAAGTGCTGGTTTCTGAACCAGCAGAAGAGGATATAACAAGCAACCAGGAAAAGTCAGGAAAAAGAACTAGGAGCTCAATGGAGGTCCAAAAGAACAAGAGAAATGTTAAATCTAGGAAGAAACAAAAATCTGCTTTTATAAGCAACACTGAAGAGGATAAAAGTCCTGGTCTTCAGGGTCAGAGCTTGAGCAGTTGCTGCTCAGAGGATGATGACTCTCAGGAGCTAAATGGAGAAGGGTGTTCAAGCTTGAGCCCAAAGGATTCTACAGCTCTGAAGGGAAAATCAAGATCTAATAGAGGTTCTGCTACTGATCCACAGAGTGTCTATGCAAAAAAAAGAAGAGAGAGAATAAATGAAAGGTTGAGGATCCTACAAAGCCTAGTCCCAAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAACTCCAAATTAAGCTTCTGAGCTCTGATGATCTCTGGATGTACGCTCCAATAGCTTACAATGGAATGAACATTGGACTAAACCTCAATATTACCACACCAACCAAACAACCATAA 1059 0.4098 MDPVEQTSEEWSSLSGLYTAEEAEFMSQLLGNCSVPENLYGNSNLEIPSTLWPGHESTIVTVTGINSSSYFPSNADNSNADFLRFLKGSSSIADSSNIFSATSGGNRCLNDPVANIAYMSMEDAKFNPYSVQGNDSQHMNGNTDEEIALEVIGDKNLLAHKECEVLVSEPAEEDITSNQEKSGKRTRSSMEVQKNKRNVKSRKKQKSAFISNTEEDKSPGLQGQSLSSCCSEDDDSQELNGEGCSSLSPKDSTALKGKSRSNRGSATDPQSVYAKKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLNLNITTPTKQP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03072 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 330 IPR036638 GO:0046983
Rops6g03072 352 MobiDBLite consensus disorder prediction 212 269 - -
Rops6g03072 352 MobiDBLite consensus disorder prediction 170 196 - -
Rops6g03072 352 FunFam Basic helix-loop-helix transcription factor 266 323 - -
Rops6g03072 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 79 338 - -
Rops6g03072 352 SMART finulus 271 320 IPR011598 GO:0046983
Rops6g03072 352 CDD bHLH_AtIND_like 266 328 - -
Rops6g03072 352 MobiDBLite consensus disorder prediction 170 274 - -
Rops6g03072 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 314 IPR011598 GO:0046983
Rops6g03072 352 Pfam Helix-loop-helix DNA-binding domain 275 315 IPR011598 GO:0046983
Rops6g03072 352 Gene3D - 265 322 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03072 Rops-Chr6 53880704 53882238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03072 10 350 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 40.212 1.73e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops6g03072 HLH 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03072 - - gmx:100817334 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03072 6 53880704 53882238 Rops6g03072 6 53880704 53882238 ECH