Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03060 ATGAAAACCTCAACCTCCTCCTCTAACTATCTGGTTCATTCACAACACAGTCTGGTTGGCTTAAGTGGGATCTCGTTGGATAAGAATCCTCACTCTCTCAGTGGTGGTTACAAACGTCGTCTTGCCTTGGCAATACAATTAGTGCAAATCCCAGATCTATTGATATTGGATGAGCCTCTTGCTGGACTTGGTCCTCTTTTTAGTTCTTGTACATCCTCTGCATTGAGTTCTGACATAGGCATGGGCCCTTCATGTCCTCTGTTCTGTTTCTCACATCTGTGTTTTTTGGTTGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAAGAAAGGCTGATGTTGTTCGTTCATTCCAAAAAGATGGAAGTATAGTTGCAATGGTGGGTGATGGTATCAATGACTCTCCCGCATTAGCTGCTGCAGATGTTGGTATGGCAATTGGGGCTGGTACAGATATTGCAATAGAAGCTGCTAACTATGTGTTGATGAGGGATAATTTGGAAGATGTGATCACAGTCATTGATCTTTCTAGGAAGACCTTTTCTCGTATACGATTGAATTATGTATTCGCGATGGCCTATAATATTATTGTTGTACCAGTTGCTGCTGGGGTTTTATTTCCTTCATTGGGGATCGAGTCGCCGCCATGGGTTGCTGGTGCATGCATGGCTCTCTCATCCGTGAGTGTTGTGTGCTCTTCTTTGCTTCTTAGAAGATATAGAAAACCCAAACTTACTACAATACTTGAAATAGTTGTAAATTAG 765 0.4261 MKTSTSSSNYLVHSQHSLVGLSGISLDKNPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLGPLFSSCTSSALSSDIGMGPSCPLFCFSHLCFLVGIQDVRAEVMPARKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAANYVLMRDNLEDVITVIDLSRKTFSRIRLNYVFAMAYNIIVVPVAAGVLFPSLGIESPPWVAGACMALSSVSVVCSSLLLRRYRKPKLTTILEIVVN* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03060 254 NCBIfam HAD-IC family P-type ATPase 104 215 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g03060 254 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 97 250 - -
Rops6g03060 254 Gene3D - 11 69 IPR027417 -
Rops6g03060 254 SUPERFAMILY HAD-like 96 234 IPR036412 -
Rops6g03060 254 Gene3D - 70 196 IPR023214 -
Rops6g03060 254 Pfam haloacid dehalogenase-like hydrolase 99 142 - -
Rops6g03060 254 PRINTS P-type cation-transporting ATPase superfamily signature 128 147 - -
Rops6g03060 254 PRINTS P-type cation-transporting ATPase superfamily signature 151 163 - -
Rops6g03060 254 Pfam ABC transporter 12 60 IPR003439 GO:0005524
Rops6g03060 254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 66 IPR027417 -
Rops6g03060 254 PRINTS H+-transporting ATPase (proton pump) signature 159 184 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g03060 254 PRINTS H+-transporting ATPase (proton pump) signature 128 144 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops6g03060 254 PRINTS H+-transporting ATPase (proton pump) signature 100 116 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03060 Rops-Chr6 53794038 53796853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03060 97 254 Primary Pumps ATPases AT5G44790 81.013 2.15e-75 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03060 K17686 - gmx:100778219 279.641