LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g03049	ATGTTATCAGAGTTGATGAACTTTTTGAGGGCCTGCTTTCGGCCGGGTTCAGGTGGATATGCACGCACGAGTTCAGATGGTGGAGGCAATTTGTGCTCCAATGAGTCTGGCCCTTATGGAACCTTTATTGGTGTCTATGATGGGCATGGAGGGCCTGAGACATCACGGTTTATCAATAATCACCTATTTCACCATCTCAAGAGATTTACTTCAGAGCAACAATCAATGTCAGTGGATGTAATTCGCAAGGCATTCCAAGCAACAGAAGAAGGGTTTATGTCAGTGGTTGCCAGACAATGGTCAATAACACCGCAAATTGCAGCTGTTGGGTCATGCTGTCTTGTTGGTGTTATTTGTAATGGAACCCTTTATATAGCAAATGCTGGTGATTCCCGGGCTGTTTTGGGAAGAGTAGTCAAGGCAACTGGCCAGGTTTTAGCCATGCAGTTATCAACAGAGCACAATGCATCGATAGAGTCTATAAGACAGGAGCTCCATTCTCTGCACCCTGATGATTCAAATATTGTTGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTTATTCAAGGAAGTGCAAGGAGGCTGGTGAAAGCTGCACTTCAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCAGATTTAAAGAAAATTGACCGTGGAGTTCGTCGGCATTTCCATGATGACATCACTGTGATTGTTGTGTTTCTTGACTCAAATCTCATGAGTAGGGCAAGCACTGTCAAGTTCCCTAGTATTTCTGTCAGAGGGGCCGGTATTAACCTGCCTCATAACACATTGGCACCAATCTCTGGTGGTGCCTGA	825	0.4448	MLSELMNFLRACFRPGSGGYARTSSDGGGNLCSNESGPYGTFIGVYDGHGGPETSRFINNHLFHHLKRFTSEQQSMSVDVIRKAFQATEEGFMSVVARQWSITPQIAAVGSCCLVGVICNGTLYIANAGDSRAVLGRVVKATGQVLAMQLSTEHNASIESIRQELHSLHPDDSNIVVLKHNVWRVKGLIQGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLMSRASTVKFPSISVRGAGINLPHNTLAPISGGA*	275

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g03049	274	SUPERFAMILY	PP2C-like	39	238	IPR036457	-
	Rops6g03049	274	PANTHER	PROTEIN PHOSPHATASE	34	190	IPR015655	GO:0004722\|GO:0006470
	Rops6g03049	274	ProSitePatterns	PPM-type phosphatase domain signature.	42	50	IPR000222	GO:0043169
	Rops6g03049	274	Gene3D	-	189	239	IPR036457	-
	Rops6g03049	274	Pfam	Protein phosphatase 2C	33	159	IPR001932	-
	Rops6g03049	274	ProSiteProfiles	PPM-type phosphatase domain profile.	20	237	IPR001932	-
	Rops6g03049	274	Gene3D	-	30	188	IPR036457	-
	Rops6g03049	274	CDD	PP2Cc	32	237	IPR001932	-
	Rops6g03049	274	SMART	PP2C_4	6	235	IPR001932	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g03049	Rops-Chr6	53657826	53660252	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g03049	166	263	PP2C-type Phosphatase Gene Family	AT3G51370	52.294	7.83e-30	114

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g03049	-		K01102	gmx:100794801	323.939

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