Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03045 ATGTCTCTTTCACCAGACCATTCCTTCGCCGGTGACTTGTTGTGCGGCGAAGTGATTTCCGACAAACCGTCGCCACCGTCACAGGAAGAACTCTCGCCGGTGTCCGATGAAACGGCGATCGCCGAACTGATCGACGTAGAGAGTCATCACATGCCGGAAAAAGATTACCTGCAGCGCTGCCGGGACCGCCACGTGGACATCACCGCACGGTTGGACGCCATCAATTGGATCTTAAAGGTGCACGCATTTTATCAATTTCGTCCAGTGACGGCGTTTCTCTCCGTCAACTATTTGGACCGGTTCCTCTCCTGTTCTTCTCTTCCGCGACTAAGTGGGTGGCCATTTCAGCTGTTGTCAGTGGCGTGTTTGTCTTTAGCGGCGAAAATGGAAGAGCTCCAAGTGCCTCTTTTGTTGGACCTGCAAATGTTCGAACCCAGGTTCGTGTTCGAACCTAAAACGGTTCAGAGAATGGAGCTTTGGGTCATGGCCAACCTTAAATGGAGACTCCGCTCTGTTACGCCCTTCGATTACCTCGATTATTTCATTTCCAAGCTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGAATCCGTGAACCGTTTCTTCTCTACAGCCTCCGACATCATTCTCAGCACCTCCCGTGTGATTGACTTCTTGGGGTTTGCACCGTCCACCGTGGCAGCCGCTGCCGTACTCTGCTCAGCTGGCCACGGCCACGACGCCCAATCGCCGCTGTGTTTTCACGACAGAGTAAACAAAGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACGTGGTAGACACGTGTCCCGCATCTCGCCATAAAGCCAGAAGAGCCGAGCCGGCGGCGCCTTCTAGCCCCATCGGCGTCCTCGACGCCGCTACCTGTGGCAGCTGCGACACTCGTTCCGAGAGGAATTACGCCGGCTCAAGCGGCGAACAAGCCGACCCGCCAAACAAGCGCCTTCGATCCTCTACTCCGGATGTACCGTAG 999 0.5425 MSLSPDHSFAGDLLCGEVISDKPSPPSQEELSPVSDETAIAELIDVESHHMPEKDYLQRCRDRHVDITARLDAINWILKVHAFYQFRPVTAFLSVNYLDRFLSCSSLPRLSGWPFQLLSVACLSLAAKMEELQVPLLLDLQMFEPRFVFEPKTVQRMELWVMANLKWRLRSVTPFDYLDYFISKLPSSSSSSSSSESVNRFFSTASDIILSTSRVIDFLGFAPSTVAAAAVLCSAGHGHDAQSPLCFHDRVNKEMVRCCHQLMEEYVVDTCPASRHKARRAEPAAPSSPIGVLDAATCGSCDTRSERNYAGSSGEQADPPNKRLRSSTPDVP* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03045 332 Pfam Cyclin, N-terminal domain 41 169 IPR006671 -
Rops6g03045 332 SUPERFAMILY Cyclin-like 35 169 IPR036915 -
Rops6g03045 332 CDD CYCLIN_AtCycD-like_rpt1 69 167 - -
Rops6g03045 332 MobiDBLite consensus disorder prediction 304 323 - -
Rops6g03045 332 FunFam D6-type cyclin 167 261 - -
Rops6g03045 332 SMART Cyclin_C_2 172 301 IPR004367 -
Rops6g03045 332 SMART cyclin_7 75 163 IPR013763 -
Rops6g03045 332 ProSitePatterns Cyclins signature. 70 101 IPR006671 -
Rops6g03045 332 MobiDBLite consensus disorder prediction 304 332 - -
Rops6g03045 332 Pfam Cyclin, C-terminal domain 172 277 IPR004367 -
Rops6g03045 332 FunFam D2/4-type cyclin 53 166 - -
Rops6g03045 332 Gene3D - 42 260 - -
Rops6g03045 332 PANTHER CYCLINS 43 268 IPR039361 -
Rops6g03045 332 CDD CYCLIN_AtCycD-like_rpt2 172 263 - -
Rops6g03045 332 Gene3D - 53 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03045 Rops-Chr6 53577630 53579473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03045 12 270 Core Cell Cycle Gene Families AT1G70210 43.015 1.90e-67 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03045 K18810 - gmx:100776178 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03045 6 53577630 53579473 Rops6g03045 6 53577630 53579473 ECH