Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03042 ATGCGTTTCTTCAAATCCTCTGCAACTGCAACCCAAGCAACTCACCTGCTACTTGTTGTCTCCCTGTTTGGGTTGCTGAGCTTCCTTCCATCTCCTTCTTCAGGAAAAAGCAATACCTCTATAATTGTGGCGATTGTTGTCCCAATTGTTGTTGCCTTGGTACTTTTCATTCTCGGCTGCTGCTTCCTGCGTAAGAGGGCAGGCAAGAAGTATAATAACTTCATCTCCAATTCAATTCGGGAGGATCTTGCAGATGTAGAGTCCTTGCAATTTGACTTGGCTACAGTCGAAGTTGCCACAAACCGCTTCTCCGATGAGAACAAGATTGGCGAAGGTGGATTTGGTGTGGTTTATAAGGGTATCCTCCCTAACGGACAGGAGATTGCTGTGAAGAGGCTGTCATTAACCTCCTTGCAGGGTGCACTGGAGTTCAGGAATGAAGCTGCCCTTGTGGCCAAGCTTCAACACAGAAATTTAGTGAGGGTATTGGGATTTTGCTTGGAGGGGCGCGAGAAGATGCTTGTGTATGAATACATACCAAACAAAAGTCTTGATCACATTCTATTTGATCCTGTAAAGCAGAGACAATTAGATTGGTCAACACGCTACAAGATTATAGTTGGCATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCAGCTTAGAATTATACATCGTGATCTGAAAGCTAGCAATGTTTTGTTAGATGAAAATATGAACCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCAAGTAAACACAGGAAGGATTGTTGGGACTTATGGCTACATGTCTCCTGAATATGCAATGCGTGGACAGTTCTCTGTGAAATCAGATGTGTTCAGCTTTGGTGTCCTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGAGTTCTATCAAACCAATCATGCTGATGACCTCTTAAGCTATGCTTGGAAAGTTTGGACGGAGAAAACACCTTTGGAGTTGCTGGATCCAGGTTTATCCGGTGGAAAAGGGGCTTCCATTTGCAGGTGGTTCCATTGTTCTGTGTCTCTGGTTGAAGATCCAGCAACATTTGTATATGCAGACGAAGAGGAAAGACGACAGGCTGAAGAAAAGAGAAGGGATAAAGCACAAGCTCTTAATCAGTGGTACCAGCTTCTTTCATCTATTGTAACTTGTCAAAGATTAAACAACCGTTATAACAACAGTTTGTCATCAGAGATCTCAGGTGGTTCCATCGTGTTGTGTCTCTGGTTGAAGATCCAACAACATTTTGACTATCCCAGGGCAAGTGATTACTCAAGACCAAGTGACTATTCAAGATGGGGTTCCTCTGATGATGATAATGGCCTTGGTGATTCACCAAAAAATCTGGTCCCAGCACCCATTCAAGATGAATATGCAGCAGTGATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTGTTGACATGATGTCAGGGAAGGAGGACCCTGAGAACATTTTGCGACCAAGGGCATCTGGAAAGGGGGTTCTGACATCCCCTTTTAAACTACTAAAGTCCAATCACCTGGGTGTTGTACTTACATTTGCTGTCTATAACACTAATCTTCCCAATTTCGTTTCCTTTTTCTTTTTGTTATCAGCAAAAGTGGAAGATGACTATCGTCAAATGAGAGAGCTGAAAGTTCGTGCTGAAGCTGCAGACGTGGCAAAATCTCTGTTTCTTGCGATAGTTTCACATGAGATCAGAACTCCAATGAATGGTGTATTAGGTATGCTGCAAATGTTGATGGACACTGACCTTGATGAAAACCAGATGGATTGTGCCCAAACTGCCCACGAGAGTGGTAAAGATCTTATATCAGTCATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCAGGCAAGCTTGAACTTGAAGCTATAGCTTTTGATCCACATGTTATTCTAGATAAAGTTTTACCACTTTTCTCTGAAAAATCTAATCCAAAAGGAATTGAGTTCACTCATGATAAAGGACATGTTTTTGTCTCGATTCATCTGGCAAATGAAGTGAAGAACCCACTTCATATTATGGATGCAGTGTTGAGAGAAGGCTTCAATTTGGATCAGGACATGCCAGACAGAACATATAATACATTAAGTGGGTTTCCTGTCAGCAACAGATGGAAAAGCTGGGCAAATTTTAAGAAGTTAAATAGCATAAATTTGATAGATGAGCCTGAAATCATTCAACTACTAGTAACAGTTGACGACACAAGTATAGGAATTCCTGCAGATGCACAAAGCCGCATATTCACACCTTTTATGCAGGCTGATAGTTCCACATCCCAGATGTATGGTGGAACTGGAATAGGACTGAGCATTAGTAAATGTTTAGTTGACCTCATGGGAGGAGTAATTGGATTTGTAAGTGAGCGTGGAATTGGAAGTACTTTTTCATTTACCGGAAATTTCAGAAAAGGAGAAACCACATCTTTGGCTGCAAAGTGGCAGAATTACAGTCTTTTTGTCATCTGCAGGGGTTGGGGATGTGTGTGGATGTAA 2544 0.4175 MRFFKSSATATQATHLLLVVSLFGLLSFLPSPSSGKSNTSIIVAIVVPIVVALVLFILGCCFLRKRAGKKYNNFISNSIREDLADVESLQFDLATVEVATNRFSDENKIGEGGFGVVYKGILPNGQEIAVKRLSLTSLQGALEFRNEAALVAKLQHRNLVRVLGFCLEGREKMLVYEYIPNKSLDHILFDPVKQRQLDWSTRYKIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTQVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTEFYQTNHADDLLSYAWKVWTEKTPLELLDPGLSGGKGASICRWFHCSVSLVEDPATFVYADEEERRQAEEKRRDKAQALNQWYQLLSSIVTCQRLNNRYNNSLSSEISGGSIVLCLWLKIQQHFDYPRASDYSRPSDYSRWGSSDDDNGLGDSPKNLVPAPIQDEYAAVIFAQETVSHIVSVDMMSGKEDPENILRPRASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPNFVSFFFLLSAKVEDDYRQMRELKVRAEAADVAKSLFLAIVSHEIRTPMNGVLGMLQMLMDTDLDENQMDCAQTAHESGKDLISVINEVLDQAKIEAGKLELEAIAFDPHVILDKVLPLFSEKSNPKGIEFTHDKGHVFVSIHLANEVKNPLHIMDAVLREGFNLDQDMPDRTYNTLSGFPVSNRWKSWANFKKLNSINLIDEPEIIQLLVTVDDTSIGIPADAQSRIFTPFMQADSSTSQMYGGTGIGLSISKCLVDLMGGVIGFVSERGIGSTFSFTGNFRKGETTSLAAKWQNYSLFVICRGWGCVWM* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03042 847 Pfam CHASE domain 466 534 IPR006189 -
Rops6g03042 847 FunFam Histidine kinase 4 544 632 - -
Rops6g03042 847 CDD STKc_IRAK 109 344 - -
Rops6g03042 847 CDD HisKA 569 630 IPR003661 GO:0000155|GO:0007165
Rops6g03042 847 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 743 815 IPR003594 -
Rops6g03042 847 Gene3D Transferase(Phosphotransferase) domain 1 179 390 - -
Rops6g03042 847 ProSiteProfiles Histidine kinase domain profile. 576 820 IPR005467 -
Rops6g03042 847 MobiDBLite consensus disorder prediction 435 461 - -
Rops6g03042 847 Pfam Protein tyrosine and serine/threonine kinase 106 306 IPR001245 GO:0004672|GO:0006468
Rops6g03042 847 Gene3D Phosphorylase Kinase; domain 1 66 178 - -
Rops6g03042 847 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 623 815 IPR036890 -
Rops6g03042 847 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 555 635 IPR036097 GO:0000155|GO:0007165
Rops6g03042 847 FunFam Cysteine-rich receptor-like protein kinase 10 65 178 - -
Rops6g03042 847 PRINTS Bacterial sensor protein C-terminal signature 763 773 IPR004358 GO:0016310|GO:0016772
Rops6g03042 847 PRINTS Bacterial sensor protein C-terminal signature 780 798 IPR004358 GO:0016310|GO:0016772
Rops6g03042 847 PRINTS Bacterial sensor protein C-terminal signature 745 759 IPR004358 GO:0016310|GO:0016772
Rops6g03042 847 PRINTS Bacterial sensor protein C-terminal signature 804 817 IPR004358 GO:0016310|GO:0016772
Rops6g03042 847 SMART HKATPase_4 660 820 IPR003594 -
Rops6g03042 847 Gene3D - 557 636 - -
Rops6g03042 847 Pfam His Kinase A (phospho-acceptor) domain 570 634 IPR003661 GO:0000155|GO:0007165
Rops6g03042 847 ProSiteProfiles Protein kinase domain profile. 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03042 847 Gene3D CHASE domain 428 556 IPR042240 -
Rops6g03042 847 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 31 347 - -
Rops6g03042 847 FunFam cysteine-rich receptor-like protein kinase 10 179 362 - -
Rops6g03042 847 SUPERFAMILY Protein kinase-like (PK-like) 87 336 IPR011009 -
Rops6g03042 847 Coils Coil 364 386 - -
Rops6g03042 847 CDD HATPase_EvgS-ArcB-TorS-like 738 815 - -
Rops6g03042 847 ProSiteProfiles CHASE domain profile. 460 542 IPR006189 -
Rops6g03042 847 Gene3D - 702 821 IPR036890 -
Rops6g03042 847 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Rops6g03042 847 SMART serkin_6 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03042 847 SMART HisKA_10 569 634 IPR003661 GO:0000155|GO:0007165
Rops6g03042 847 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03042 Rops-Chr6 53547028 53555502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03042 31 360 Receptor kinase-like Gene Family AT4G23230 59.644 5.81e-129 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g03042 PK_Tyr_Ser-Thr 9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03042 - - gmx:113000776 529.25