Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03028 ATGGATCAAGCTGGAAGCAAAGGTAGAGGAGAGGTATTGGATCCGGTTCATGAAGGGGTTGATGAGAATTTAAGTGGTTTGGTTGAAGGGGTCGCAATTGATGCAGGAGAAGGAAGCAGCTTGAGTGACAGAGCTGGTATAATTGGAGAAGTTGGAACTACAGGAGAGGTAGGTAAGGATTCAGGATCCAATAATGAGCTAAAGGAGGAGCCTGTGGAAGTTAAGGGTGAGAACAAACATGATCAAGAAAATATATATGATAAATTACCTGGGGTTGATCAAGGAACTAGTTATAATTCAAACAATTTGGTTAATCCGGAAGTGCTTGAAACAGTGATTGTAGTAGAGTCTGTTCAAAATGAAAACATCAATGGAGATAATAGGAAATTGGAAGCAAAAGCTCATGAATCGGGGTTGAGATTGGTATCCATGAAGACACCAAAAGGGGTGTATGAAACAGATAAAAATTCATGTGTGATTGATGTAAAGTGTAGCAGCGGCAAAGGGTATTATGAGAATTCAGAAGATGAAAGGATCTGTAGGATTTGCCATCTGGCTACTGGGCAGCCATCAGATGCAACCACTGTAGGTAATGCTAATAGTGCCACAAGTACAGATTTAATTCAGATTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACACATTCATTGTGCTGAGGCTTGGTTCAAGCTCAGGGGAAACAGATTATGTGAAATATGTGGTGAGACGGCAAAAAATGTTTCGGGGGTTGCCAATAACGGATTCATGGAAGACTGGAATGAAAGAAGATTCTTGGACAACGATATTAACTCATCCCGCAACTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGACGTGCCTGTGA 882 0.4161 MDQAGSKGRGEVLDPVHEGVDENLSGLVEGVAIDAGEGSSLSDRAGIIGEVGTTGEVGKDSGSNNELKEEPVEVKGENKHDQENIYDKLPGVDQGTSYNSNNLVNPEVLETVIVVESVQNENINGDNRKLEAKAHESGLRLVSMKTPKGVYETDKNSCVIDVKCSSGKGYYENSEDERICRICHLATGQPSDATTVGNANSATSTDLIQIGCACKDELGIAHIHCAEAWFKLRGNRLCEICGETAKNVSGVANNGFMEDWNERRFLDNDINSSRNFGGCWRGQPFCNFLMTCL* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03028 293 PANTHER ZINC FINGER, RING-CH-TYPE 55 293 - -
Rops6g03028 293 SMART ringv_2 179 242 IPR011016 GO:0008270
Rops6g03028 293 ProSiteProfiles Zinc finger RING-CH-type profile. 172 248 IPR011016 GO:0008270
Rops6g03028 293 MobiDBLite consensus disorder prediction 52 78 - -
Rops6g03028 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 253 IPR013083 -
Rops6g03028 293 MobiDBLite consensus disorder prediction 62 78 - -
Rops6g03028 293 Pfam RING-variant domain 180 241 IPR011016 GO:0008270
Rops6g03028 293 SUPERFAMILY RING/U-box 174 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03028 Rops-Chr6 53329205 53332213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03028 160 293 C3H Transcription Factor Family AT5G05830 35.211 2.89e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03028 - - gmx:100791720 415.231