Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03027 ATGTTGATGGCCACCATGGCAATGAGGAGGAGCAAGTTTAGTGTCAAGATACAGGGTCATCTCAGACAGGCAGCAATCATCACCACAAGATCACGCATCCTCTGTACATCTTACGTGGAGCAAGATTGTGAATTTGATATTGGTCATTTGAAGAGGTTCTCCTTCTGTGAGTTGCAAATTGCTACTGCAAATTTCAGTCCAAAAAACATCCTAGGACAAGGTGGATTTGGTGTTGTGTACAAAGGGTTCCTTGCAAACAAAATGTCGATGGCAGTAAAGAGGCTGAAAGATCCTAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGCTTGGCTGTACACTGGAACCTCTTGCGTCTCTGTGGATTTTGTATGACACCAAATGAAAGGTTACTTGTTTATCCATACATGCCAAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAACCATCTTTGGACTGGAACAGGCGAATGCGTGTTGCTCTCGGGGCTGCACGTGGACTTCTATCAAAGGGTTCACATGTAACTACTGCAGTACGTGGTACCGTGGGGTACATTGCCCCCGAGTATCTTTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGCTTATAACAGGACAAAAGGCACTGGATGCTGGAAATGGTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAAAACCTTATTTGAGGAAAAGAGGCCAAAAATGTTAATTGATAGGGATCTGAAGGGATGCTTTGATCCAATAGGGTTAGAAAAAGCAGTGGAATTGTCTTTACAGTGTACTCAGTCACTTCCTAGTTTGAGACCTAAGATGTCAGAAGTTTTGAAGATTCTAGAAGGCTTTGTTGGTCAATCAGTAAGGCTAGAGGAGTCAAATGGGGGCTACCTTATATGA 951 0.428 MLMATMAMRRSKFSVKIQGHLRQAAIITTRSRILCTSYVEQDCEFDIGHLKRFSFCELQIATANFSPKNILGQGGFGVVYKGFLANKMSMAVKRLKDPNYTGEVQFQTEVEMIGLAVHWNLLRLCGFCMTPNERLLVYPYMPNGSVADRLRETCREKPSLDWNRRMRVALGAARGLLSKGSHVTTAVRGTVGYIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDAGNGQVQKGMILDWVKTLFEEKRPKMLIDRDLKGCFDPIGLEKAVELSLQCTQSLPSLRPKMSEVLKILEGFVGQSVRLEESNGGYLI* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03027 316 ProSiteProfiles Protein kinase domain profile. 65 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03027 316 SUPERFAMILY Protein kinase-like (PK-like) 49 298 IPR011009 -
Rops6g03027 316 Gene3D Transferase(Phosphotransferase) domain 1 171 306 - -
Rops6g03027 316 Gene3D Phosphorylase Kinase; domain 1 35 140 - -
Rops6g03027 316 FunFam Somatic embryogenesis receptor kinase 1 35 140 - -
Rops6g03027 316 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 47 296 - -
Rops6g03027 316 ProSitePatterns Protein kinases ATP-binding region signature. 71 93 IPR017441 GO:0005524
Rops6g03027 316 Pfam Protein tyrosine and serine/threonine kinase 69 176 IPR001245 GO:0004672|GO:0006468
Rops6g03027 316 Pfam Protein tyrosine and serine/threonine kinase 185 296 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03027 Rops-Chr6 53312341 53317496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03027 26 314 Receptor kinase-like Gene Family AT5G45780 63.526 1.67e-140 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Rops6g03027 PK_Tyr_Ser-Thr 6.6e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03027 - - ccaj:109812711 488.034