Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03021 ATGAGGCTGAACGGAGAAGAAGAAGAAGAAGAAGAGAAATCTCAGGCGGGTACAACGGCGTTTTCCGGTGGTGGTTGTGGGGAGAAAGTGGTGGTTGGTTACGCCTTAACGGCCAAGAAGAAGAAGAGCTTTCTGCAGCCAAATTTCATTGGCCTTGCACGGAGCAAGGGGGTATACTTTGTTCCCATTGATCTAGACAAGCCACTGCACGAACAAGGTCCATTTGATATTATCTTGCATAAGTTGTCAGGAGAGGAGTGGCACGATATTATTGAGGATTACAGGCAAAAACATCCAGATGTAATCGTCCTTGATCCTCCAAATGCAATTCAACATTTGCACAACCGCCAATCTATGCTGCAAGATGTGGTGGATCTAAACTTATCTGACTGCCATGGTAAGGTTGGCATTCCACGTCAGCTAGTTATCCCAGAACACAGAGACCCATCTACTATCCCTTATGAAGTAACTAAAGCCGGGATGAAGTTGCCATTAGTTGCAAAACCACTAGTTGTGGATGGTAGTGCAAGGTCACACGAACTATTTCTAGCTTACGATGAATTCTCTCTTTCAGAGCTTGAACCTCCACTAGTTCTACAAGAGTTTGTCAATCATGGTGGTCTTCTCTTTAAGATTTATATTGTTGGGGAAACCATAAAGGTTGTGAGGCGTTACTCTCTTCCAAATATCAGTGAACAGGAGCTATCAGAAGTTGCAGGCGTATTCCGTTTCCCAAGAGTTTCATGTGCAGCTGCTTCCGCAGATGATGCTGTCCTAGATCCCAGCATTGCCGAGCTCCCACCAAAACCTTTGTTGGAGAGACTTGCCAGGGAACTTCGTCATAGATTGGGACTGCGGTTGTTCAACATAGATATGATTCGGGAATATGGGACCAAGGATGTGTTTTATGTCATTGATATCAACTACTTTCCTGGGTATGGAAAAATGCCAGACTACGAGCACGTGTTTACAGATTTTCTACTTAGCATAGCGCAGAGCAACGATGTCGACCTCAAGGAGAAACAAGGGTCGTCTAAGATCGAGATGAAGGAGATGAGCAACGAGAGCAACTTACAAGTTACTTTCTTGAAGCGTCGAAATGGGCTCTTCAAGAAAGCTAGTGAGCTTTGCACCATTTGTGGTGCCGATGTTGCTCTTGTTGTGTTCTCACATGGTGAGAAGGTCTTTTCCTTTGGCCACCCCAATGTTGATGTTGTGATAGATCGTTATCTTACATGGGTCCCACCACAAAACAATGACACTATGAGATTCATTGAGGTTCGTTATACTGCCAATGTGCGTGACCTCAATGCATAA 1317 0.4465 MRLNGEEEEEEEKSQAGTTAFSGGGCGEKVVVGYALTAKKKKSFLQPNFIGLARSKGVYFVPIDLDKPLHEQGPFDIILHKLSGEEWHDIIEDYRQKHPDVIVLDPPNAIQHLHNRQSMLQDVVDLNLSDCHGKVGIPRQLVIPEHRDPSTIPYEVTKAGMKLPLVAKPLVVDGSARSHELFLAYDEFSLSELEPPLVLQEFVNHGGLLFKIYIVGETIKVVRRYSLPNISEQELSEVAGVFRFPRVSCAAASADDAVLDPSIAELPPKPLLERLARELRHRLGLRLFNIDMIREYGTKDVFYVIDINYFPGYGKMPDYEHVFTDFLLSIAQSNDVDLKEKQGSSKIEMKEMSNESNLQVTFLKRRNGLFKKASELCTICGADVALVVFSHGEKVFSFGHPNVDVVIDRYLTWVPPQNNDTMRFIEVRYTANVRDLNA* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03021 438 Gene3D - 145 243 - -
Rops6g03021 438 MobiDBLite consensus disorder prediction 1 20 - -
Rops6g03021 438 Gene3D - 354 420 IPR036879 GO:0003677|GO:0046983
Rops6g03021 438 FunFam Inositol-tetrakisphosphate 1-kinase 25 131 - -
Rops6g03021 438 CDD MADS_MEF2_like 343 412 IPR033896 GO:0000977|GO:0045944
Rops6g03021 438 FunFam Inositol-tetrakisphosphate 1-kinase 143 242 - -
Rops6g03021 438 FunFam Agamous-like MADS-box protein AGL62 354 420 - -
Rops6g03021 438 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 352 398 IPR002100 GO:0003677|GO:0046983
Rops6g03021 438 SUPERFAMILY SRF-like 344 421 IPR036879 GO:0003677|GO:0046983
Rops6g03021 438 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 132 328 IPR040464 -
Rops6g03021 438 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 31 110 IPR041429 -
Rops6g03021 438 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 28 334 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Rops6g03021 438 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Rops6g03021 438 Gene3D - 24 132 - -
Rops6g03021 438 PRINTS MADS domain signature 344 364 IPR002100 GO:0003677|GO:0046983
Rops6g03021 438 PRINTS MADS domain signature 379 400 IPR002100 GO:0003677|GO:0046983
Rops6g03021 438 PRINTS MADS domain signature 364 379 IPR002100 GO:0003677|GO:0046983
Rops6g03021 438 SMART madsneu2 342 401 IPR002100 GO:0003677|GO:0046983
Rops6g03021 438 ProSiteProfiles MADS-box domain profile. 342 402 IPR002100 GO:0003677|GO:0046983
Rops6g03021 438 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 106 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03021 Rops-Chr6 53249678 53258391 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03021 338 437 Type I MADS-box Gene Family AT5G60440 62.745 2.60e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops6g03021 Ins134_P3_kin 9.1e-86 CL0179