Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03020 ATGAGCAACGAGAGTAACTTGCAAGTGACTTTCTCGAAGCGTCGAAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGTACCCTTTGCGGTGCTGATGTTGCTCTCGTTGTGTTCTCACCTGGTGATAAGGTCTTTTCTTTTGGCCACCCCAATGTTGATGCTGTGATAGATCGTTATCTTATGCGGACCCCACCACAAAACTCTGGCACCATGCAATTCATTGAGGCTCGTCGTAGCGCCAACGTGTGTGACCTCATTACACACCTCACTCAGATCAATAACTTGCTTAATACTGAGAGGAAACATGGTGAAGAGTTAAGTCGTTTGAGTCAGGCAACACAGACACAATTATGGTGGACATGTCCTATTAAAGACATGAATAAGGCCCAACTTGAGCAATTCAAGGTGACATTGGAGGATTTAAAGAAACATGTTGCTGATTATTATGATAAGCTTCTTATTCAAGATGCTGGTACTATTAACCCAACTCAGTTTTTTGCAGGTAGCTCTTCTTCCAACCCCCTCACTCCCCATCATCAGCCACCTCCAACTCTTCATTTGTTTCTGTCATAA 573 0.4398 MSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGDKVFSFGHPNVDAVIDRYLMRTPPQNSGTMQFIEARRSANVCDLITHLTQINNLLNTERKHGEELSRLSQATQTQLWWTCPIKDMNKAQLEQFKVTLEDLKKHVADYYDKLLIQDAGTINPTQFFAGSSSSNPLTPHHQPPPTLHLFLS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03020 190 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Rops6g03020 190 FunFam Agamous-like MADS-box protein AGL62 3 69 - -
Rops6g03020 190 SMART madsneu2 1 50 IPR002100 GO:0003677|GO:0046983
Rops6g03020 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 47 IPR002100 GO:0003677|GO:0046983
Rops6g03020 190 PANTHER MADS BOX PROTEIN 2 146 - -
Rops6g03020 190 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Rops6g03020 190 PRINTS MADS domain signature 13 28 IPR002100 GO:0003677|GO:0046983
Rops6g03020 190 PRINTS MADS domain signature 28 49 IPR002100 GO:0003677|GO:0046983
Rops6g03020 190 Gene3D - 3 70 IPR036879 GO:0003677|GO:0046983
Rops6g03020 190 Gene3D - 71 162 - -
Rops6g03020 190 MobiDBLite consensus disorder prediction 169 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03020 Rops-Chr6 53241879 53242451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03020 1 173 Type I MADS-box Gene Family AT5G60440 53.977 1.54e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops6g03020 SRF-TF 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03020 - - pvu:PHAVU_007G047900g 229.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03020 6 53241879 53242451 Rops6g03020 6 53241879 53242451 ECH