Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03019 ATGAAGAAGATGAGCAACGAGAGCAACTTGCAAGTGACTTTTTCGAAGCGTCGAAGTGGACTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGTTGATGTCGCTCTTATTGTGTTCTCACCTGGTGAGAAAGTATTTTCTTTTTGCCACCCAAATGTTGATGTAGTGATAGATCGCTATCTCACACGAGCCCCACCACAAAATTCTGGAACCATGCAATTCATTGAGGCTCATCGCAGTGCAAACGTCCGTGATCTGAATGCACAACTCACTCAAATCAATAACCAGCTTGATACTGAGAGGAAGCGTAGTGAAGACTTGAGTCGTTTGCGCAAGGCAACACAAACTCAATTCTGGTGGGCATGCCCCGTTGAAGAAATGAATAAAACCCAACTTGAGCAACTCAAGGTGGCCTTGGAGGAGTTGAAGAAACATGTCACTTATTATAGTGATAAACTCCTAATTCAGGGCATTGGTACTACTAACCCAACTCAATTTTCTGTAGGTGGCTCCTCTTCCAACCCTCTCCCTTTCCATCATCAGCCACCTCCACCTCCTCAGTTATTTTCACCACAATTTTTTCAGAACCCTATGATGCAGAATCATATGTTTGATGGCACCATGATGCACCACCATGCCTTTAACAACATTGGAGGATATGCACCTACTAGATTCTTTTGA 687 0.4396 MKKMSNESNLQVTFSKRRSGLFKKASELCTLCGVDVALIVFSPGEKVFSFCHPNVDVVIDRYLTRAPPQNSGTMQFIEAHRSANVRDLNAQLTQINNQLDTERKRSEDLSRLRKATQTQFWWACPVEEMNKTQLEQLKVALEELKKHVTYYSDKLLIQGIGTTNPTQFSVGGSSSNPLPFHHQPPPPPQLFSPQFFQNPMMQNHMFDGTMMHHHAFNNIGGYAPTRFF* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03019 228 Gene3D - 74 157 - -
Rops6g03019 228 Coils Coil 127 147 - -
Rops6g03019 228 PRINTS MADS domain signature 16 31 IPR002100 GO:0003677|GO:0046983
Rops6g03019 228 PRINTS MADS domain signature 31 52 IPR002100 GO:0003677|GO:0046983
Rops6g03019 228 CDD MADS_MEF2_like 1 64 IPR033896 GO:0000977|GO:0045944
Rops6g03019 228 PANTHER MADS BOX PROTEIN 1 149 - -
Rops6g03019 228 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Rops6g03019 228 SUPERFAMILY SRF-like 1 69 IPR036879 GO:0003677|GO:0046983
Rops6g03019 228 Coils Coil 85 112 - -
Rops6g03019 228 Gene3D - 6 73 IPR036879 GO:0003677|GO:0046983
Rops6g03019 228 ProSiteProfiles MADS-box domain profile. 1 54 IPR002100 GO:0003677|GO:0046983
Rops6g03019 228 FunFam Agamous-like MADS-box protein AGL62 6 72 - -
Rops6g03019 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 3 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03019 Rops-Chr6 53234453 53235139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03019 1 176 Type I MADS-box Gene Family AT5G60440 54.190 1.52e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops6g03019 SRF-TF 7.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03019 - - gmx:100794751 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03019 6 53234453 53235139 Rops6g03019 6 53234453 53235139 ECH