Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03018 ATGCAATTCATTGAGGCTCGTCGTAGCGCCAACGTGTGTGACCTGACTACACAAGTCACTCTGATTAATAACCTGCTTGATACTAAGAGGAAACATGGTGAAGAGTTAAGTAGTAGTAAGGCAACACAAACTCAACTCTGGTGGGCATGTCTTGTTGAAGACATGAATATGACCCAACTTGAGCAATTTAAGAAAGCCAATGAGCTTTGCACCTTTTGTGGTGCCGATGTTGTTCTCGTTGTGTTCTCACATGGTGAGAATGTCTTTTCTTTTGACCACCCCAATGTTGATGTTGTGATAGATCGTTATCTCACATGGACCCCACCACAAAACTCTAGCATCATGCAGTTCATTGAGGCTTATCGTAGTGCCAACGTGTACGACCTCATTGCACAACTCACTCAGATCAATAACCAGCTTGATATTGAGAGGAAACATGGTGAAGAGTTGAGTCGTTTGTATAAGGCAACACAAACTCAGTTCTGA 486 0.428 MQFIEARRSANVCDLTTQVTLINNLLDTKRKHGEELSSSKATQTQLWWACLVEDMNMTQLEQFKKANELCTFCGADVVLVVFSHGENVFSFDHPNVDVVIDRYLTWTPPQNSSIMQFIEAYRSANVYDLIAQLTQINNQLDIERKHGEELSRLYKATQTQF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03018 161 ProSiteProfiles MADS-box domain profile. 63 95 IPR002100 GO:0003677|GO:0046983
Rops6g03018 161 SUPERFAMILY SRF-like 63 112 IPR036879 GO:0003677|GO:0046983
Rops6g03018 161 Gene3D - 61 127 IPR036879 GO:0003677|GO:0046983
Rops6g03018 161 PANTHER MADS BOX PROTEIN 62 147 - -
Rops6g03018 161 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 63 91 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03018 Rops-Chr6 53222989 53227601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03018 1 64 Type I MADS-box Gene Family AT5G60440 36.364 5.89e-06 43.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops6g03018 SRF-TF 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03018 - - mtr:25488967 134.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g03018 6 53222989 53227601 Rops6g03018 6 53222989 53227601 ECH
Rops1g02450 1 47357693 47358364 Rops6g03018 6 53222989 53227601 PCT