Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03017 ATGTCTACCTCAAGGAGAAGTAAGGGTCGCCAAAAGATCGAGATGAAGAAGATGAGCAACGAGAACAACTTGCAAGTGACTTTCTCGAAGCGCCGAAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCTGATGTTGCTCTTATTGTGTTCTCACCTGGTGAGAAAGTCTTTTCTTTTGGCCACCCAAATGTTGACGCAGTGATAGATCGCTATCTCACACGGGCCCCACCACAAAATTCTGGAACCATGCAATTCATTGAGGCTCATCGCAGTGCCAACATTTGTGATCTTAATGCACAACTCACTCAAATCAATAACCATCTTGATACCGAGAGGAAGCATGGTGAAGAGTTGAGTCATTTGCGCAAGGCAACCCAGACTCAATTTTGGTGGGCATGCCCCGTTGAAGAAATGAATAAAACCCAACTTGAGCAACTCAAGGTGGCCTTGGAGGAGTTGAAGAAACATGTCACTCATTATTCTGATAGACTCCTAATTCAAGGCGCTGGTACTACTAACCCAACTCAATTTTCTGCAGGTGGCTTCTCTTCCAACCCTCTCCCTCTCCATCATCAGCTGCCACCACCTCCTCAGTTATTTCCACCACAGTTCTTTCAGAACCCTGTGATGCATAATCATATGTTTGATGACACCATGATGCACTACCATGCCTTTAACAACATTGGAGGATATGCACCTACTGGATTCTTTTGA 729 0.4554 MSTSRRSKGRQKIEMKKMSNENNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSFGHPNVDAVIDRYLTRAPPQNSGTMQFIEAHRSANICDLNAQLTQINNHLDTERKHGEELSHLRKATQTQFWWACPVEEMNKTQLEQLKVALEELKKHVTHYSDRLLIQGAGTTNPTQFSAGGFSSNPLPLHHQLPPPPQLFPPQFFQNPVMHNHMFDDTMMHYHAFNNIGGYAPTGFF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03017 242 Gene3D - 88 177 - -
Rops6g03017 242 SUPERFAMILY SRF-like 9 83 IPR036879 GO:0003677|GO:0046983
Rops6g03017 242 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Rops6g03017 242 PANTHER MADS BOX PROTEIN 10 163 - -
Rops6g03017 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Rops6g03017 242 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
Rops6g03017 242 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Rops6g03017 242 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Rops6g03017 242 Coils Coil 141 168 - -
Rops6g03017 242 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Rops6g03017 242 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Rops6g03017 242 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Rops6g03017 242 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03017 Rops-Chr6 53204628 53205356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03017 5 190 Type I MADS-box Gene Family AT5G60440 55.026 2.33e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops6g03017 SRF-TF 1.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03017 - - gmx:100780445 282.337