Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03016 ATGGATATGTTTAAGCAAACAAAGAAAACCACAGGCCGCAAGAAGATTGAGATCAAGAAGCTTGACAAGGACAGCAACAAGCAAGTCACATTCTCAAAACGAAGAACAGGCCTGTTCAAAAAAGCCAGTGAACTTTGTATTTTATGCAATGTTCATATAGCAATTATTGTGTTTTCTCCTGCTGAGAAATTGTTCTGCTTTGGCCAGCCCAACACTGAATCCATCATCACCAGCTATGTCAATGGAACCAAAGAGTTTGAGCCTATAAAGCCAAGAGGGAAATCAGTACTAACCTATGAAGAGCACAATAGGCAATATGAGGAGGCCATGAAGACATTGGAGTTGGAAAAGAAGAGGCTAGCAGAGATTGAAACTTTGGCTAAGGTTTGGAATAGAGCGGATTGGTGGAATGAGCCAATTGAAGAGATGAGTGATGATCAACTTGAGCAATTTAGGGTGTCTATTTTTGAGTTAAGGAGGAAGCTGGCTGAAAGGGCAGATTTGATGATACTTGCTATGTTACAGAATGTTTAG 534 0.4045 MDMFKQTKKTTGRKKIEIKKLDKDSNKQVTFSKRRTGLFKKASELCILCNVHIAIIVFSPAEKLFCFGQPNTESIITSYVNGTKEFEPIKPRGKSVLTYEEHNRQYEEAMKTLELEKKRLAEIETLAKVWNRADWWNEPIEEMSDDQLEQFRVSIFELRRKLAERADLMILAMLQNV* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03016 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Rops6g03016 177 PANTHER MADS BOX PROTEIN 13 162 - -
Rops6g03016 177 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Rops6g03016 177 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Rops6g03016 177 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Rops6g03016 177 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Rops6g03016 177 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Rops6g03016 177 CDD MADS_MEF2_like 12 84 IPR033896 GO:0000977|GO:0045944
Rops6g03016 177 FunFam Agamous-like MADS-box protein AGL62 23 87 - -
Rops6g03016 177 Gene3D - 24 88 IPR036879 GO:0003677|GO:0046983
Rops6g03016 177 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Rops6g03016 177 Coils Coil 96 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03016 Rops-Chr6 53183763 53184296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03016 7 176 Type I MADS-box Gene Family AT5G60440 38.333 5.15e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Rops6g03016 SRF-TF 8.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03016 - - cam:101502875 248.825