Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03013 ATGGCTGTTCTTTCTTTAAGGCTATTTTTCTTTCTTTATTGGCTCCTTCTTATAATCATTTTCACATCTCAAGTTAACGCCGACAACAATACGCAAAACTTCCACTACTTTTGTGATTATTTTAAAAGAGGAGGCAACTTCTCAGCCGATAGCATCTATCACACCAACCTCAACACACTTTTGTCCACCCTCACTTCCAACACAAAAATTGACCATGGTTTCTACAATTTCTCTCATGGCCAAAACACTAACAAAGTGAACGCCATGGGGCTGTGCAGAGGGGATGTTAAGCCAGATAAGTGCCGCAGTTGCCTCAGTGGCGCAAAAGCCAATCTCACACTGCTCTGTCCAAATCAGAAGGAAGCAATTGGGTGGTATGAGGATGAGTTATGCATGTTGCGTTACTCAAACAGCTCAATATTTTATAGCATGCAAAATGGACCTGCTTATTATGCTAATAACATGAGGGATGCAACTGATTTGGATGAATTCAATAAAGTGGTTAGGAACTTGCTGGATACCTTAAGAACCAAAGCTGCATCAGGTGACTCTCGTCTTAAATATGATGCAGGAAATGCACCCGGTCCTGATTTTCAAACCATATATGGTCTTGTTCAGTGCACACCTGATTTGTCTGAGTCACAATGCAATGACTGCTTGGATCAGTCTATTGCACGTATTCCAATAGATTGTTGCAAGAACAAGCTAGGTGGCAGAGTTGTTAGGCCAAGTTGTAATATGAGATTTGAAACCTCATTCCAATTCTATGATCCTACAGCTGTACCACCACCTCCACCATCCACCACCACTAGTAACACTTCCCCACCAGGAAAGAGTAACAAAACTGCCACCACCATCATCGCCACAGTAGTACCGGTTGTTGTTGGTATGGCTGTTATGGTGCTCATTTGCATCTGTCTAAGACTCAGGAAGCCAAGGAAAAAGTTTGAAACTCTAGAAGAAAAAGATGATGACGAAGAAATTGAAATTTCCGAGTCACTGCAATTCAACTTGAACACTATACGGGAAGCTACAAATGACTTCTCTGATTCTAATAAACTTGGACAAGGTGGATTTGGGGCTGTTTACAAGGGTAGGCTCTCCAATGGAAAAGAGTTTGCTGTCAAAAGGTTGTCAAGGAGTTCTAACCAAGGAGATATGGAATTTAAGAATGAAGTGCTTTTAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTCTGTCTAGAAGGAAGAGAAAGACTACTTGTCTATGAATTTGTTCCCAATAAAAGCCTTGATTACTTCATATTTGATCAAACCAAGAGAGCACAATTAGATTGGGAAAGGCGCTACAATATCATTAAAGGCACTGCTCGAGGCATTCTTTATCTTCATGAGGATTCTCGATTACGCATCATCCATCGTGATCTCAAAGCAAGCAACATTCTCTTGGATGAGGATATGAATGCTAAGATAGCCGATTTTGGCACAGCCAGACTATTTGGTGTGGACCAAACTCAGGAAAATACAGAAAGAATTGTTGGAACCCCTGGATATATGGCACCTGAGTATCGAATGTATGGACAGTTTTCATTGAAGTCAGATGTGTTTAGTTTTGGTGTACTGGTCCTTGAGATAATAACTGGCAAAAAAAACCATGGCATTGGTCATGAGGAGAATATAGAGCATTTAACAAGCATTGTATGGAGAAACTGGAGAGATGGGTCAGTTACAAATATTATAGATCCCACATTGAACAATGATTCACAAAATGAAATAATGAGATGCATCCACATTGGGTTACTCTGCGTTCAAGAAAATATAACAGATAGACCAACCATGGCTTCTGTTGTAATGATGCTTAATAGCTATTCTGTCACCCTCGCCATACCTCCAGAACCTGCATTTTATCTGGATAGTAGAACTGGAAACCTTCCAAACATGCAGTCATGGGAATATAATTCAAGGGCAACAAGATCAAGCGAATCCAAAACTGAACCAGCTCAAGAGTCAGTCAATGAGGCTTCAATTACAGATCTATATCCTCGGTAG 2043 0.4068 MAVLSLRLFFFLYWLLLIIIFTSQVNADNNTQNFHYFCDYFKRGGNFSADSIYHTNLNTLLSTLTSNTKIDHGFYNFSHGQNTNKVNAMGLCRGDVKPDKCRSCLSGAKANLTLLCPNQKEAIGWYEDELCMLRYSNSSIFYSMQNGPAYYANNMRDATDLDEFNKVVRNLLDTLRTKAASGDSRLKYDAGNAPGPDFQTIYGLVQCTPDLSESQCNDCLDQSIARIPIDCCKNKLGGRVVRPSCNMRFETSFQFYDPTAVPPPPPSTTTSNTSPPGKSNKTATTIIATVVPVVVGMAVMVLICICLRLRKPRKKFETLEEKDDDEEIEISESLQFNLNTIREATNDFSDSNKLGQGGFGAVYKGRLSNGKEFAVKRLSRSSNQGDMEFKNEVLLVAKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDQTKRAQLDWERRYNIIKGTARGILYLHEDSRLRIIHRDLKASNILLDEDMNAKIADFGTARLFGVDQTQENTERIVGTPGYMAPEYRMYGQFSLKSDVFSFGVLVLEIITGKKNHGIGHEENIEHLTSIVWRNWRDGSVTNIIDPTLNNDSQNEIMRCIHIGLLCVQENITDRPTMASVVMMLNSYSVTLAIPPEPAFYLDSRTGNLPNMQSWEYNSRATRSSESKTEPAQESVNEASITDLYPR* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03013 680 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 32 140 - -
Rops6g03013 680 MobiDBLite consensus disorder prediction 256 281 - -
Rops6g03013 680 FunFam Cysteine-rich receptor-like protein kinase 17 316 423 - -
Rops6g03013 680 MobiDBLite consensus disorder prediction 651 680 - -
Rops6g03013 680 Gene3D - 148 253 IPR038408 -
Rops6g03013 680 Gene3D - 35 139 IPR038408 -
Rops6g03013 680 ProSiteProfiles Protein kinase domain profile. 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03013 680 FunFam Cysteine-rich receptor-like protein kinase 10 148 254 - -
Rops6g03013 680 Gene3D Phosphorylase Kinase; domain 1 312 423 - -
Rops6g03013 680 Pfam Protein kinase domain 349 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03013 680 SMART serkin_6 348 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03013 680 MobiDBLite consensus disorder prediction 651 673 - -
Rops6g03013 680 ProSiteProfiles Gnk2-homologous domain profile. 146 254 IPR002902 -
Rops6g03013 680 SUPERFAMILY Protein kinase-like (PK-like) 331 618 IPR011009 -
Rops6g03013 680 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Rops6g03013 680 Gene3D Transferase(Phosphotransferase) domain 1 424 626 - -
Rops6g03013 680 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 48 679 - -
Rops6g03013 680 CDD STKc_IRAK 354 619 - -
Rops6g03013 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Rops6g03013 680 ProSiteProfiles Gnk2-homologous domain profile. 35 140 IPR002902 -
Rops6g03013 680 FunFam cysteine-rich receptor-like protein kinase 10 424 625 - -
Rops6g03013 680 Pfam Salt stress response/antifungal 43 137 IPR002902 -
Rops6g03013 680 Pfam Salt stress response/antifungal 159 251 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03013 Rops-Chr6 53163369 53167184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03013 6 680 Receptor kinase-like Gene Family AT4G21410 47.564 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g03013 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03013 - - var:108324787 844.343