Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03010 ATGGCTACAATCCCTTCGCTGCTGCTGCTTTCGTTTCTTCCTCTCCTCGTCCCACTCAAATCTGAAGTCAGCATCCCGCTAGGTCTCCTGTATCATGAATGTGACCAAATCCTCGGACACTTTACTGCAGGTGATACCTACGACGACAACCTGCATGCCCTTTTTGCCAAAATCTACTATGACAAAGTAATTGACTACGGCTTCTACAATTTCTCCTACGGCCAAGACCCAGATAAAGTTAACGTGATCGGGCTCTGTAGAGGAGATGTTAAGCTAGAAGGGTGCCGTACTTGCCTGCAATCCTCCGCGGCTCTTCTCAGAGAGCGGTGCTCAGAACAGAAGGAGGCAATTGGGTACAATGACGCATGCATGATACGCTATTCTAACAAGTCAATATTTGGTGTCAGGGAAACTAAAACTTCCCAAGTTTACTCAGACGGTGACTCACGTCGGAAGTTTGCTGAAGGAGATGCTGCAGTTCAATCAAGCAATGAAACTATACATGCTTTGGTTCAGTGCACACCTGATCTATCTAAGCAATTGCTATGAAGGAAAATGGGAAGGCCACGTTGGATGACAAAGCACCGAATGAACGTGCCAAGAGAGAGAAGAATATGCCTACACGTTTCAAGGATTTTGTTATGCAGTAGTTTGTTATTATGGAGAGTTGGTTATTGCTGTGGTCTATGCTTGAGTTCGGCTTTGTCGAGCATTCCTGCAGCCGGCTGTGACGGAAGGAAGTTTAGTAGGTATATAGGGCCCAGTTGTTATATTAGGTATGACAACTCCTCCTTTTTTGATGCCATAGTCGATGCACCAGCACCACAGCCTTCCGTAGTAGTTCCCCCTCCTCTTCGTCCACCCGCATCTGCTAATACCACGACGTCTACACAAGGAAAGAGCAGGACATTAAGAACGGTCCTTGCTGTAGTAATTCCGGTGGTCGTCATTGTCGTAATTTGGGAGCGAGAAGACCAAGACACGGATACATTGAAGGTAAGTCAACGTGAAGGTGATAGTGACATTAAAAACACCGAGTTATTGCAATTTGACTTTGCAACCATCAGATTTGCTACAAACAACTTCTCTGATGAGAATAAGCTTGGCCAAGGTGGATTTGGAACTGTTTATAAGGGTATACTCTCTGATGGACAAGAAGTTGCTATCAAAAGGTTGTCTAATAACTCTGATCAAGGAGAAACAGAATTTAAGAACGAAGTATTGCTAACGGGAAAACTTCAGCATCGAAACTTAGTTAAGCTACTAGGTTTCTGTTTAGCAAGAAGAGAAAGGATACTGATATATGAGTTTGTCCCCAATAAAAGTCTTGATTATATCATATTTGATTCAATCAAGCGTGCAAATTTGGATTGGGAAAGACGCTTCAAAATTATCAGAGGCATTGCTCGTGGTCTTCTTTATCTTCATGAAGATTCTCGATTGCAAATTGTTCACCGTGATATGAAAACAAGTAACATTCTGTTAGATGATGAGTTAAATCCTAAAATAGCAGATTTTGGCATGGCAAGATTGTTTGATGTCAATCAAACTGAAGGCAGTACAATGACAATTGTTGGGACTTTTGGATACATGGCTCCTGAGTACATTAAACACGGACAATTTTCAGTAAAATCAGATGTTTTTAGTCTTGGCGTAATGATTCTAGAAATTGTATGCGGCAAGAAAAACGGTGAGACTCGTGATGGGGAGACGGTAGAGGATCTACTAAGCTTTGCATGGAAAAATTGGACGGCAGGAACAGCTTCAGACATTGTAGATTCTACATTAAAACATGATTCCGAGAATGAAATAATGAGATGCATCCACATTGGATTACTGTGTGTTCAAGAAGATGCAGAAGACAGACCAACCATGACTTTGGTTTCACTAATGCTCAACAGCAGCTCTTTCCCACTTCCTGAACCTTCAGAACCTCCATTTTTAATGAAACGTAAAAGTTTGTTGTCTATACCATCATCAGATGAGCAATATTTAGAGGTCATAAGGTCAGGTGACTCAGGAAGTCAATCTACTCAAGGATCAACAAACCCACAAAGCACGAATGCATCTCACAACAGTGAAGGACCAAAGGTTGATGTGAAAAGTTGGGAATCATGGCTGTGGAAAGAAAACAGCCATGATAAATGTATGTTAAGAAATAGCACTACTCTTTGCACTCAGTTGTTACTTCTCATGCCCACAGGACAATTTATTATAATGGCAGCTGTTTCTTCTAGGCTGTTTTCTTTTCTTCTTTCCCTGGTTGTAATGATAATATCTCAAGCCAGCGCCCAGCCAACTTACCTAGACACTGAATCATGTAGTAACACTGGGAACTACACAGCCAATAGCACCTACCAGACCAACCTCAACACCCTTTTATCCAATCTCTCTTCCAACACAGAAATTGACTATGGTTTCTACAATTTCTCTTATGGCCAAAACCCAGACAAAGTTAACGCCATTGGGTTGTGCAGAGGAGATGTTAAGCCAGAAGATTGCCGCAGTTGCCTCAACCATTCCAGAATCAACATCACACAGCTTTGTCCAAACCAGAAAGAGGCAATTGTGTGGTATGAAAAATGCATGTTGCGCTACTCGAATAACCCGATATTTGGCATCATGAAAACTGAACCTCCGCGTTATATGTGTAACAGAAACAATGCAACGGATGTGGATCAGTTCAATCAAATACTCGGCAACTTGATGGAAAACCTGAAAGACAAAGCTGTATTCGGTGACTCTCGTCGAAAGTATGCCACGAATACTACAACTTATGCAAATCATACCATATACGGTCTTGTGCAGTGTACGCCTGATTTGTCACGAAAAGACTGCAATGACTGCTTGGATGTGGCTTTCCAATATATCCCAGAAACTTGTAAGGACAAGATGGGTGGTATAGTGATGCTTCCCAGTTGTAATATTAGATATGAAACTTACAGCTTCTACGAACCCACACCAACATTAGACCCAGATGTACCACCATCAACACCACTTCTTCCATCCACCAATAACACTTCCCCAGAAGAGAAGGGACATTCATTGCGAACTACCATCGCCATAGTTGTGCCTGTTGTTCTCGTCGTTGTTGTTGTTCTCCTCTTTTTTATTCTCAGATTTTTAAGGAGGAAGAAGACAAGGAAAAATCTTGTAGATGAAGAAGATGATAATGATGAAGAAATTAAAATTGCTGAGTCATTGCAATTCGAGTTTGACACAATACGAGTTGCAACAAGTAACTTCTCTGATTCTAATAAACTTGGAGAAGGTGGATTTGGAGCTGTTTACTGGGGTAAGCTCTCTGATGGACAAGTGGTTGCTGTCAAAAGGTTGTCAAAGAATTCTAGCCAAGGAGATATGGAATTTAAAAATGAAGTGCTTTTAGTGGCCAAGCTTCAACATCGAAACTTAGTTAGGCTACTTGGTTTCAGTCTGGAAGGGAGAGAAAGGCTACTTGTCTATGAATATGTTTCTAATAAAAGTCTTGATTACTATATATTTGATCCAACAAAGAAAGCACAATTGGATTGGGAAAGACGATACAAAATCATTAGAGGGATTGCTCGAGGCCTGCTTTATCTTCATGAGGATTCACGACTACGCATTATACATCGTGATCTCAAAGCAAGTAATATTCTCTTAGATGAAGATATGAATCCCAAGATATCGGATTTTGGCCTGGCAAGACTGATTGTTATGGATCAAACACAAGGAAGTACAGATACAGTTGTTGGAACCTATGGATATATGGCACCTGAGTATGTAATGCATGGACAGTTTTCTGTGAAATCAGATGTCTTTAGTTTTGGTGTATTGGTTCTTGAGATTGTAAGTGGTCAAAAAAACAGTGGCTTTCGTCATGGGGAGAATGTGGAGGATCTATTGAGCTTCGCTTGGAGAAACTGGAGGGAGGGGACAGCTACAAATATTATAGATGTGTCGTTAAACAACAGTTCAGGAAATGAAATGACAAGATGCATCCACATTGGCTTACTTTGTGTTCAACAAAATGCAGTTAAAAGACCAACCATGGCTACCGTTGCACTCATGCTTAATAGCCACTCTCAGAGCCTCCAAGTACCTTCAGAACCTGCATTTTATATGGACAGTAGAACTAGAGGCCTTCCAGACATGAGGTCGTGGGAAGATAATTCAGGGGCAACAAGATCAAGTGAATCCACGGCTAGATCAACTCGAGAATCGGTAAACGAAGCTTCAATTACTGAGTTATACCCTCGCTGA 4245 0.4139 MATIPSLLLLSFLPLLVPLKSEVSIPLGLLYHECDQILGHFTAGDTYDDNLHALFAKIYYDKVIDYGFYNFSYGQDPDKVNVIGLCRGDVKLEGCRTCLQSSAALLRERCSEQKEAIGYNDACMIRYSNKSIFGVRETKTSQVYSDGDSRRKFAEGDAAVQSSNETIHALVQCTPDLSKQLL*RKMGRPRWMTKHRMNVPRERRICLHVSRILLCSSLLLWRVGYCCGLCLSSALSSIPAAGCDGRKFSRYIGPSCYIRYDNSSFFDAIVDAPAPQPSVVVPPPLRPPASANTTTSTQGKSRTLRTVLAVVIPVVVIVVIWEREDQDTDTLKVSQREGDSDIKNTELLQFDFATIRFATNNFSDENKLGQGGFGTVYKGILSDGQEVAIKRLSNNSDQGETEFKNEVLLTGKLQHRNLVKLLGFCLARRERILIYEFVPNKSLDYIIFDSIKRANLDWERRFKIIRGIARGLLYLHEDSRLQIVHRDMKTSNILLDDELNPKIADFGMARLFDVNQTEGSTMTIVGTFGYMAPEYIKHGQFSVKSDVFSLGVMILEIVCGKKNGETRDGETVEDLLSFAWKNWTAGTASDIVDSTLKHDSENEIMRCIHIGLLCVQEDAEDRPTMTLVSLMLNSSSFPLPEPSEPPFLMKRKSLLSIPSSDEQYLEVIRSGDSGSQSTQGSTNPQSTNASHNSEGPKVDVKSWESWLWKENSHDKCMLRNSTTLCTQLLLLMPTGQFIIMAAVSSRLFSFLLSLVVMIISQASAQPTYLDTESCSNTGNYTANSTYQTNLNTLLSNLSSNTEIDYGFYNFSYGQNPDKVNAIGLCRGDVKPEDCRSCLNHSRINITQLCPNQKEAIVWYEKCMLRYSNNPIFGIMKTEPPRYMCNRNNATDVDQFNQILGNLMENLKDKAVFGDSRRKYATNTTTYANHTIYGLVQCTPDLSRKDCNDCLDVAFQYIPETCKDKMGGIVMLPSCNIRYETYSFYEPTPTLDPDVPPSTPLLPSTNNTSPEEKGHSLRTTIAIVVPVVLVVVVVLLFFILRFLRRKKTRKNLVDEEDDNDEEIKIAESLQFEFDTIRVATSNFSDSNKLGEGGFGAVYWGKLSDGQVVAVKRLSKNSSQGDMEFKNEVLLVAKLQHRNLVRLLGFSLEGRERLLVYEYVSNKSLDYYIFDPTKKAQLDWERRYKIIRGIARGLLYLHEDSRLRIIHRDLKASNILLDEDMNPKISDFGLARLIVMDQTQGSTDTVVGTYGYMAPEYVMHGQFSVKSDVFSFGVLVLEIVSGQKNSGFRHGENVEDLLSFAWRNWREGTATNIIDVSLNNSSGNEMTRCIHIGLLCVQQNAVKRPTMATVALMLNSHSQSLQVPSEPAFYMDSRTRGLPDMRSWEDNSGATRSSESTARSTRESVNEASITELYPR* 1415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03010 1413 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Rops6g03010 1413 Gene3D Phosphorylase Kinase; domain 1 1050 1156 - -
Rops6g03010 1413 Coils Coil 1413 1413 - -
Rops6g03010 1413 Gene3D Transferase(Phosphotransferase) domain 1 437 636 - -
Rops6g03010 1413 Gene3D Transferase(Phosphotransferase) domain 1 1157 1365 - -
Rops6g03010 1413 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 771 1412 - -
Rops6g03010 1413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1202 1214 IPR008271 GO:0004672|GO:0006468
Rops6g03010 1413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Rops6g03010 1413 CDD STKc_IRAK 1087 1352 - -
Rops6g03010 1413 Pfam Protein kinase domain 1082 1290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03010 1413 Pfam Protein kinase domain 362 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03010 1413 MobiDBLite consensus disorder prediction 1377 1413 - -
Rops6g03010 1413 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 766 870 - -
Rops6g03010 1413 ProSiteProfiles Protein kinase domain profile. 361 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03010 1413 ProSitePatterns Protein kinases ATP-binding region signature. 1087 1109 IPR017441 GO:0005524
Rops6g03010 1413 Pfam Salt stress response/antifungal 39 129 IPR002902 -
Rops6g03010 1413 Pfam Salt stress response/antifungal 773 867 IPR002902 -
Rops6g03010 1413 Pfam Salt stress response/antifungal 883 980 IPR002902 -
Rops6g03010 1413 FunFam Cysteine-rich receptor-like protein kinase 10 879 982 - -
Rops6g03010 1413 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 28 132 - -
Rops6g03010 1413 SUPERFAMILY Protein kinase-like (PK-like) 1069 1369 IPR011009 -
Rops6g03010 1413 ProSiteProfiles Gnk2-homologous domain profile. 767 870 IPR002902 -
Rops6g03010 1413 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Rops6g03010 1413 SMART serkin_6 361 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03010 1413 SMART serkin_6 1081 1357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03010 1413 Gene3D - 28 131 IPR038408 -
Rops6g03010 1413 Gene3D - 767 869 IPR038408 -
Rops6g03010 1413 Gene3D - 878 982 IPR038408 -
Rops6g03010 1413 FunFam cysteine-rich receptor-like protein kinase 10 437 638 - -
Rops6g03010 1413 CDD STKc_IRAK 367 632 - -
Rops6g03010 1413 MobiDBLite consensus disorder prediction 669 694 - -
Rops6g03010 1413 ProSiteProfiles Protein kinase domain profile. 1081 1366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03010 1413 MobiDBLite consensus disorder prediction 1383 1405 - -
Rops6g03010 1413 ProSiteProfiles Gnk2-homologous domain profile. 876 982 IPR002902 -
Rops6g03010 1413 FunFam Cysteine-rich receptor-like protein kinase 10 1042 1156 - -
Rops6g03010 1413 ProSiteProfiles Gnk2-homologous domain profile. 155 264 IPR002902 -
Rops6g03010 1413 MobiDBLite consensus disorder prediction 991 1011 - -
Rops6g03010 1413 FunFam cysteine-rich receptor-like protein kinase 10 1157 1358 - -
Rops6g03010 1413 MobiDBLite consensus disorder prediction 669 696 - -
Rops6g03010 1413 SUPERFAMILY Protein kinase-like (PK-like) 346 662 IPR011009 -
Rops6g03010 1413 FunFam Cysteine-rich receptor-like protein kinase 10 322 436 - -
Rops6g03010 1413 Gene3D Phosphorylase Kinase; domain 1 323 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03010 Rops-Chr6 53124922 53133324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03010 25 647 Receptor kinase-like Gene Family AT4G38830 42.296 2.58e-159 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g03010 Pkinase 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03010 - - var:108324785 1360.13