Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03005 ATGCGTATTTTCCAATCCTCTGCAACTGCAACCCACCTTATACTTGTTGTATCCCTGTTTGGGTTGCTGAGCTTCGCATGTAAAGCAGCTCCAGTATACACCGATCCTGCCTGCACAGATGGGTCATATTACCGACCGAACACAACTTTTCAAACCAACTTGAATGTCCTTATCTCTTCCCTTGTCTCAAACGTCACCCTTCACGACAGATTCTACCGCACCAACATATCCCTTGGAACCACTGACGAAGTGAAGGGACTGTTCCTCTGTCGTGGTGACGTCACCCCTTCTGTGTGTGAACAGTGTGTCGCGGCAGCAGCACAGAACATTACACGACACTGCACCAACCAAACAGAGTCCATAATCTGGTATGACGAGTGCTTGCTGTGTTACTCCAACGCTTCCTATTTGAACAACATAGTCACAGGAATGAACTTAATGTCCAAAGAGAGCGTCCTTGATTCAGACCTTGCCAGGTTCAATGAATTTCTGGCAGCTACGTTGAATGATCTTGTACAGAAAGCTTTGAATCCTCCTTCAGGCAATAAATTTGCCACAAGAGAAGTAGATTTCACGAGCTCAATGAAGCTGTACACGCTGGCACAGTGCACGCCTGAATGTAACACATATGAATTGTACCCTTTTTACAATGTCTCGGCCATATCCACTCAACCACAGCTTCCCTCTCCTTCTTCAGGAAAAAGCAATATCTCTTTAATTGTTGCGATAGTTGTCCCAATTGTTGTTGCTGTGGCACTTTTCATTCTCGGCTGCTGCTTCCTGCGAAAGAGGGCAAGCAAGAAGTACACTAATTTCATCTCCAATTCAATTCGGGCGGATCTCGCAGATGTAGAGTCCTTGCATTTTGACTTGGCTACTATTGAAGCTGCCACAAACTGCTTCTCGAATGAGAACAAGATTGGCGAAGGTGGATTTGGTGTGGTTTATAAGGGTATCTTCCCTAACAGACAGGAGATAGCTGTGAAAAGGCTGTCATTAACCTCCTTGCAGGGTGCACTAGAGTTCAGGAATGAAGCTACCCTTGTGGCCAAGCTTCAACACAGAAATTTAGTGAGGCTATTGGGATTTTGCTTGGAGGGGAGGGAGAAGATGCTTGTCTATGAATACATACAAAACAAAAGCCTTGATCATTTCCTATTTGATCCTGTAAAGCAGAGAGAATTAGATTGGTCAAGACGCTACAAGATTATAGTTGGCATTGCTCGAGGAATTCTTTATCTCCATGAAGATTCCCAGCTTAGAATTATACATCGTGATCTGAAAGCTAGCAATGTTTTATTAGATGAAAATATGAATCCAAAGATTTCAGATTTTGGCATGGCAAAAATTTTCCAGGCAGATCAGACTCCAGTAAATACAGGAAGGATTGTTGGGACTTACGGTTACATGTCTCCGGAATATGCAATGCGTGGACAGTTCTCTGTGAAATCAGATGTGTTCAGCTTTGGGGTCCTAGTTTTGGAGATTGTGAGTGGCAAGAAGAACACTGAGTTCTATCAAACCAATCATGCTGATGACCTATTAAGCTATGCTTGGAAAGTTTGGACGGAGAAAACACCTTTGGAGTTGCTGGATCCAACACTGAGAGGTTCTTATTCAAGAAATGAAGTCATCAGATGCATCCATATTGGTTTATTGTGTGTTCAGGAAAATCCATCAGACAGGCCTTCGATGGCAACTATTGGACTTATGCTGAACAGTTATTCAATTACCATGTCATTACCAAGACAGCCAGCATCTTTCCTCCATAGAAGAACACCTGACAGGCTAAAGCATGGGCTTGATTCTTCTGATCAGTCTACCTCATGTTTAATTCCATGCAAACAGAGCTTAATATGGCTGGTGAGACCAGAACATGAGCAGTTTCTGGAAATTAATATTTTATCAGGTGAAGGTGAAGGCAAAGATGAAGGTGAAGGTGATAATGACATTAAAACCACCGAGTTATTGCAATTTGAATTTGCAACCATCACATTTGCTACAAACAACTTCTCTTATGAGAATAAGCTTGGCCAAGGTGGATTTATAACTGTTTATAAGGGTGCACTCTCTGATGGACAAGAAGTTACTATCAAAAGGTTGTCTAATAATTCTGACCAAGGAGTATCAGAATTTAAGAACGAAGTGTTGCTAACGGGGAAACTTCAGCACCCAAACCTTCTGTTTAGCAAGAAAAGAAAGGCTACTGATATATGA 2217 0.4235 MRIFQSSATATHLILVVSLFGLLSFACKAAPVYTDPACTDGSYYRPNTTFQTNLNVLISSLVSNVTLHDRFYRTNISLGTTDEVKGLFLCRGDVTPSVCEQCVAAAAQNITRHCTNQTESIIWYDECLLCYSNASYLNNIVTGMNLMSKESVLDSDLARFNEFLAATLNDLVQKALNPPSGNKFATREVDFTSSMKLYTLAQCTPECNTYELYPFYNVSAISTQPQLPSPSSGKSNISLIVAIVVPIVVAVALFILGCCFLRKRASKKYTNFISNSIRADLADVESLHFDLATIEAATNCFSNENKIGEGGFGVVYKGIFPNRQEIAVKRLSLTSLQGALEFRNEATLVAKLQHRNLVRLLGFCLEGREKMLVYEYIQNKSLDHFLFDPVKQRELDWSRRYKIIVGIARGILYLHEDSQLRIIHRDLKASNVLLDENMNPKISDFGMAKIFQADQTPVNTGRIVGTYGYMSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTEFYQTNHADDLLSYAWKVWTEKTPLELLDPTLRGSYSRNEVIRCIHIGLLCVQENPSDRPSMATIGLMLNSYSITMSLPRQPASFLHRRTPDRLKHGLDSSDQSTSCLIPCKQSLIWLVRPEHEQFLEINILSGEGEGKDEGEGDNDIKTTELLQFEFATITFATNNFSYENKLGQGGFITVYKGALSDGQEVTIKRLSNNSDQGVSEFKNEVLLTGKLQHPNLLFSKKRKATDI* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03005 738 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Rops6g03005 738 SUPERFAMILY Protein kinase-like (PK-like) 286 595 IPR011009 -
Rops6g03005 738 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Rops6g03005 738 ProSiteProfiles Protein kinase domain profile. 301 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03005 738 ProSiteProfiles Protein kinase domain profile. 671 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03005 738 Pfam Salt stress response/antifungal 38 133 IPR002902 -
Rops6g03005 738 Gene3D Phosphorylase Kinase; domain 1 263 376 - -
Rops6g03005 738 Gene3D Phosphorylase Kinase; domain 1 640 729 - -
Rops6g03005 738 FunFam Cysteine-rich receptor-like protein kinase 10 262 376 - -
Rops6g03005 738 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Rops6g03005 738 Gene3D - 33 136 IPR038408 -
Rops6g03005 738 Gene3D - 144 211 IPR038408 -
Rops6g03005 738 SMART serkin_6 301 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03005 738 SUPERFAMILY Protein kinase-like (PK-like) 651 728 IPR011009 -
Rops6g03005 738 Coils Coil 735 738 - -
Rops6g03005 738 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 644 727 - -
Rops6g03005 738 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 31 136 - -
Rops6g03005 738 FunFam cysteine-rich receptor-like protein kinase 10 377 579 - -
Rops6g03005 738 Gene3D Transferase(Phosphotransferase) domain 1 377 582 - -
Rops6g03005 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Rops6g03005 738 Pfam Protein tyrosine and serine/threonine kinase 303 568 IPR001245 GO:0004672|GO:0006468
Rops6g03005 738 CDD STKc_IRAK 307 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03005 Rops-Chr6 53072812 53080947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03005 633 727 Receptor kinase-like Gene Family AT4G05200 56.842 1.59e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g03005 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03005 - - gmx:113000776 910.983