Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03003 ATGCGAGCGTTGATGACCGTCTGTCGACACGTAACCTCCCCTGCTACCGCACCAACACCTTCACCAGCAGGGCTTGTTCCTCCAACAACTTCTTCTGATTCAGGAGGAAGTAGTGGGATTTCATCAGGGACAATTGTTGCAATTGTGGTTCCAATTACAGTGGCTGTGTTGCTATTTGTTGTGGGCATTTGTTTCTTAAGCAAAAAAGCAAGGAAGAAGCATGATTCTGCACAAGACCAAAAAACTGAAACCGAGATCACCACCGTGGAATCCTTGAGATTTGATTTCAGTACAATTGAAGCAGCCACAAACAAATTTTCTGAAGCTAATAAGCTAGGTGAAGGTGGATTTGGCGAGGTTTACAAGGGCTTGCTTCCAAATGGACAAGAAATAGCTGTCAAGAGACTCTCTAAAAGCTCTGGACAAGGTGGGGAGCAATTTAAGAATGAAGTTGAGCTGGTTGCCAAGCTTCAACATAGAAATTTAGCGAGGCTTCTAGGATTTTGCTTGGAAAGAGAAGAAAAGATACTTGTTTACGAATATGTAGTCAACAAAAGCCTTGACTATATTCTTTTTGATCCTGAAAAGCAAAGGGAGTTGGACTGGATAAGGCGTTACAAGATTATTGCAGGAATTGCTCGAGGCATTCAATATCTTCATGAAGATTCTAGGCTTAAAATTATTCACCGTGATCTCAAAGCTAGCAACATATTGTTGGATAGAGATATGAATCCAAAAATCTCAGATTTTGGCATGGCAAGAATATTCGGAGTGGATCAAACTCAAGGAAACACCAGTAGGATAGTAGGGACATATGGTTACATGTCTCCAGAGTATGCAATGCATGGAGAGTTCTCTGCTAAGTCTGATATATACAGTTTTGGAGTCCTCATTATGGAAATTATAAGTGGCAAGAGGAATAGTTCTTTCTATGAAACAGATGTTGCTGAGGATCTATCGAGCTATGCTTGGAAACTTTGGAAGGATGGAGCACCCTTGCAATTGATGGACTCCACATTAAGAGAATCCTATACTCCAAATGAAGTTATCAGATGCATCCATATTGGTTTACTTTGTGTCCAAGAAGATCCAGCAGATAGACCTACCATGGCAACAATAGTGCTTATGCTAGATAGTTACTCTGTTACTCTACCAGTACCTAATCAGCCTGCATTTTTTCTACACAGTGGAACTGATCCAAACATGCTGCAAATTGGTCAATCTACTACCAATTCAACACCAAAGTCTGACAATGATAAAGCTTGA 1266 0.4068 MRALMTVCRHVTSPATAPTPSPAGLVPPTTSSDSGGSSGISSGTIVAIVVPITVAVLLFVVGICFLSKKARKKHDSAQDQKTETEITTVESLRFDFSTIEAATNKFSEANKLGEGGFGEVYKGLLPNGQEIAVKRLSKSSGQGGEQFKNEVELVAKLQHRNLARLLGFCLEREEKILVYEYVVNKSLDYILFDPEKQRELDWIRRYKIIAGIARGIQYLHEDSRLKIIHRDLKASNILLDRDMNPKISDFGMARIFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSAKSDIYSFGVLIMEIISGKRNSSFYETDVAEDLSSYAWKLWKDGAPLQLMDSTLRESYTPNEVIRCIHIGLLCVQEDPADRPTMATIVLMLDSYSVTLPVPNQPAFFLHSGTDPNMLQIGQSTTNSTPKSDNDKA* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03003 421 SUPERFAMILY Protein kinase-like (PK-like) 91 406 IPR011009 -
Rops6g03003 421 SMART serkin_6 106 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03003 421 Gene3D Transferase(Phosphotransferase) domain 1 183 384 - -
Rops6g03003 421 ProSiteProfiles Protein kinase domain profile. 106 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03003 421 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
Rops6g03003 421 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 414 - -
Rops6g03003 421 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 67 181 - -
Rops6g03003 421 Gene3D Phosphorylase Kinase; domain 1 66 181 - -
Rops6g03003 421 FunFam cysteine-rich receptor-like protein kinase 10 182 384 - -
Rops6g03003 421 MobiDBLite consensus disorder prediction 12 37 - -
Rops6g03003 421 Pfam Protein tyrosine and serine/threonine kinase 109 376 IPR001245 GO:0004672|GO:0006468
Rops6g03003 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Rops6g03003 421 CDD STKc_IRAK 112 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03003 Rops-Chr6 53026166 53029742 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03003 37 396 Receptor kinase-like Gene Family AT4G23190 66.116 3.25e-177 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g03003 PK_Tyr_Ser-Thr 6.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03003 - - lang:109353867 659.062