Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g03002 ATGTGGTTTGAAATTTATCCTTTCTATCGATCCCTTGCTTTGCCGCCAACGCCAACGCCGGCAGGACTTGTTCCTCCTGCAAAATCAGGAGAAAATAAGAAAGGTGGATCACGAACAATTATCTTAGTTGTTATTCCCATTGTGGTATCGGCGACAATCTTTTCTGTTTGCTGCTATTTGCTAAAGAGAAAAGCAAGAAGGAGCAAGTTCAAGACACTTCTCAGAGAAAATTTTGGTCGTGAGAGTACCACTTTAGAGGGTTTGCAGTTCGACTTAGCTACCCTTGCAACAGCAACAAACAACTTCTCACATGAGAACAAGATTGGCAAAGGTGGATTTGGAGAAGTTCACAAGGGCACTCTTCATGATGGTCGACTTATAGCTGTCAAGAGACTTTCAACAAGTTCTACGCAAGATAATCAACAACGGAAGTTAAGTTGGTCTGAGCGTTACAAAATTATTCAGGGAACTGCTCTAGGAATTCATTATTTACATGAATATTCTCGACTTAAAGTTATACATCGTGACCTCAAACCTAGTAATATTTTATTAGATGAAAATATGAACCCAAAAATATCCGATTTTGGCATGGCTAGAATTGTTGAAATTGATCAAGATCGTGGAAAAACCAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTTTCTGAAAAGACAGATGTTTTTAGTTTTGGAGTTATGGTTTTAGAGATTATTACTGGGAGAAGGAATGCAAATTCATATGAATCATACAATGTTACCAAAGGCCTCTTGAGCTATCATTCTGGAACCTCAGCACCAACAATGATTAAGGGAGAAGGAAATATTCCAACACACGTGATTGTGGTCATTGTTGTTGTTGTTTTGGTTGGCATTTCGGTGATGCTTTTATGCATTGGCTACTGTTTCTTATGTAAAAAAAGGAGAAAGAGACGCAAGGCCAGTCTCAAAGAAAACCTTGGGCTTGATATTACTACCTTGGAGTCCTTGGAATTTGATTTGCCTACAATTGAAGTAGCAACAAACAAGTTTTCTGAAGACCGCAGGATAGGGAAAGGGGGATATGGAAAAGTCTACAAGGGAATTCTTCCTGATGGACAAGAAATAGCTGTGAAGAGACTGTCTAGAAATTCTGGGCAAGGAGTGGAGGAATTCAAAAATGAAGTGTGGTTAATAGCTAAACTTCAACATAGAAATTTGGTGAGGTTAATAGGATTTTGCCTTGAAGACAGAGAGAACATACTTATCTATGAATATGTGCCTAACAAGAGCCTTGATCACTTCCTATTTGACCCCCAAAAGCAGAGACAATTAACTTGGTCTGAACGGTACAATATCATAAAAGGAATTGCTCGAGGAATTCTCTATCTTCATGAAGATTCTCGTCTCAAGATTATACACCGTGATATCAAACCAAGCAATGTTCTTATAGATAACAACATGAATCCAAAAATCTCTGATTTTGGCATGGCAAGGATGGTGGATATAGAGCAAATTCAAGGATGTACAAACAGAGTTGTGGGCACATATGGTTACATGGCTCCTGAATATGCAATGCATGGACAATTTTCCGTAAAATCTGATGTTTTCAGTTTTGGAGTTATGGTTCTCGAGATTATTGGTGGGAAAAAGAATTCTTGTTCTTTTGAATCAAGTCGTGTTGATGACCTCTTGAGTGATGCTTGGAATCAATGGAGGAATGAATCACCATTTCAGTTGCTGGATCCAATTCTGCTAGAATCTTATAGTCCAAACGAAGTTGAAAAGTGCATACAGATTGGAGTGGCCTTGGCGCCAGTGCCTAGCCCAGACTTTACTACCAGAGGAAAAAGCAAGGCCTCTGCAGGGACAATCATTGCCATAGCTGTCCCTGTTGTCTTATTCATAGTGCTTTTCTTTCTCTGCTGCTGGTACCTAACAAGAAGAACAAAGAAGAAGCGTACTTCTTTTCAGGAACAAAATGTTGGAATTTCAACTGCAGAATCACTGCAATTTGATTTAGATACCGTAAAATCTGCCACAGACAACTTTTCCCGCGCCAATAAATTAGGTCAAGGAGGATTTGGGGAGGTATACAAGGGCACACTTCCCGGTGGACATGATATAGCTGTGAAGAGGCTATCACACAGCTCTAGACAAGGTGTTGAACAGCTCAAGAATGAGGTGGTTACAATGGCACAGCTTCAACATAGAAATCTTGTAAGGCTATTGGGATTTTGCTTGGATGAAGAAGAAAAGATACTCATCTATGAATTTGTGCCCAACAAAAGCCTGGACCATTTTCTGTTTGACCCTCAATCAGGAAATACATTGGATTGGTCAAAACGTTACATGATTATTGGTGGAATTGCACGAGGAATCCTGTATCTTCATGAAGATTCCATGCTCAAAATTATACACCGTGATCTTAAAGCTAGTAATATATTGCTGGATGGAGATTTAAATCCTAAAATTTCTGATTTTGGCATTGCCAAGATTGTTGGAGTTGACCAAACTCAAGCAAACACAAATAGAATTGTTGGAACCTTTGGCTACATGTCTCCGGAATATGCAATACGAGGGCAATTTTCAGTTAAATCTGATGTGTATAGTTTTGGGGTTCTGGTTCTAGAAATTATCGGTGGAAAGAAGAATAATTCTTTCTGTGTATCAGGCTACGATGGGAACCTGTTGAGCTATGCCTGGAAGCTCTGGAGGGAAGGGGCACAATTGGAATTGTTGGATCCTGCTCTAAGGGATTCTTGTTCAAGAGAAGAAGTTATCAGATGCTTTCATATAGGCTTGTTGTGTGTTCAAGAAGACCCATCTCAGAGACCCAAAATGCGGTCCATAGTTGTAATGTTAAACAGTCACTCTGTCACAATGCCAGACCCTCAGCATATTCAAGCATGGAGAACATATTCAAGCATGCCAACCAAGGACAAAGAGCTGCAATCTGATCAATCCACAAGCAAGTCAAACCTATGTTCTGTGGATGAAGATTATAATTCTGAATTATACCCTCGATAG 3033 0.3947 MWFEIYPFYRSLALPPTPTPAGLVPPAKSGENKKGGSRTIILVVIPIVVSATIFSVCCYLLKRKARRSKFKTLLRENFGRESTTLEGLQFDLATLATATNNFSHENKIGKGGFGEVHKGTLHDGRLIAVKRLSTSSTQDNQQRKLSWSERYKIIQGTALGIHYLHEYSRLKVIHRDLKPSNILLDENMNPKISDFGMARIVEIDQDRGKTNRIVGTYGYMSPEYAMFGQFSEKTDVFSFGVMVLEIITGRRNANSYESYNVTKGLLSYHSGTSAPTMIKGEGNIPTHVIVVIVVVVLVGISVMLLCIGYCFLCKKRRKRRKASLKENLGLDITTLESLEFDLPTIEVATNKFSEDRRIGKGGYGKVYKGILPDGQEIAVKRLSRNSGQGVEEFKNEVWLIAKLQHRNLVRLIGFCLEDRENILIYEYVPNKSLDHFLFDPQKQRQLTWSERYNIIKGIARGILYLHEDSRLKIIHRDIKPSNVLIDNNMNPKISDFGMARMVDIEQIQGCTNRVVGTYGYMAPEYAMHGQFSVKSDVFSFGVMVLEIIGGKKNSCSFESSRVDDLLSDAWNQWRNESPFQLLDPILLESYSPNEVEKCIQIGVALAPVPSPDFTTRGKSKASAGTIIAIAVPVVLFIVLFFLCCWYLTRRTKKKRTSFQEQNVGISTAESLQFDLDTVKSATDNFSRANKLGQGGFGEVYKGTLPGGHDIAVKRLSHSSRQGVEQLKNEVVTMAQLQHRNLVRLLGFCLDEEEKILIYEFVPNKSLDHFLFDPQSGNTLDWSKRYMIIGGIARGILYLHEDSMLKIIHRDLKASNILLDGDLNPKISDFGIAKIVGVDQTQANTNRIVGTFGYMSPEYAIRGQFSVKSDVYSFGVLVLEIIGGKKNNSFCVSGYDGNLLSYAWKLWREGAQLELLDPALRDSCSREEVIRCFHIGLLCVQEDPSQRPKMRSIVVMLNSHSVTMPDPQHIQAWRTYSSMPTKDKELQSDQSTSKSNLCSVDEDYNSELYPR* 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g03002 1010 SMART serkin_6 352 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03002 1010 SMART serkin_6 685 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03002 1010 SMART serkin_6 102 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03002 1010 MobiDBLite consensus disorder prediction 980 1010 - -
Rops6g03002 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Rops6g03002 1010 SUPERFAMILY Protein kinase-like (PK-like) 671 977 IPR011009 -
Rops6g03002 1010 ProSiteProfiles Protein kinase domain profile. 352 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03002 1010 SUPERFAMILY Protein kinase-like (PK-like) 90 261 IPR011009 -
Rops6g03002 1010 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 29 142 - -
Rops6g03002 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Rops6g03002 1010 Pfam Protein kinase domain 353 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03002 1010 Pfam Protein kinase domain 143 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03002 1010 FunFam Cysteine-rich receptor-like protein kinase 10 314 427 - -
Rops6g03002 1010 FunFam cysteine-rich receptor-like protein kinase 10 761 963 - -
Rops6g03002 1010 Gene3D Phosphorylase Kinase; domain 1 646 760 - -
Rops6g03002 1010 Gene3D Phosphorylase Kinase; domain 1 313 427 - -
Rops6g03002 1010 FunFam Cysteine-rich receptor-like protein kinase 10 648 760 - -
Rops6g03002 1010 CDD STKc_IRAK 691 957 - -
Rops6g03002 1010 MobiDBLite consensus disorder prediction 980 1001 - -
Rops6g03002 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Rops6g03002 1010 CDD STKc_IRAK 358 604 - -
Rops6g03002 1010 ProSiteProfiles Protein kinase domain profile. 685 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03002 1010 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Rops6g03002 1010 ProSitePatterns Protein kinases ATP-binding region signature. 108 130 IPR017441 GO:0005524
Rops6g03002 1010 ProSitePatterns Protein kinases ATP-binding region signature. 691 713 IPR017441 GO:0005524
Rops6g03002 1010 Gene3D Transferase(Phosphotransferase) domain 1 141 281 - -
Rops6g03002 1010 Gene3D Transferase(Phosphotransferase) domain 1 80 140 - -
Rops6g03002 1010 Pfam Protein tyrosine and serine/threonine kinase 688 955 IPR001245 GO:0004672|GO:0006468
Rops6g03002 1010 FunFam cysteine-rich receptor-like protein kinase 10 428 609 - -
Rops6g03002 1010 ProSiteProfiles Protein kinase domain profile. 27 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g03002 1010 FunFam cysteine-rich receptor-like protein kinase 10 127 322 - -
Rops6g03002 1010 Gene3D Transferase(Phosphotransferase) domain 1 428 608 - -
Rops6g03002 1010 Gene3D Transferase(Phosphotransferase) domain 1 761 971 - -
Rops6g03002 1010 SUPERFAMILY Protein kinase-like (PK-like) 332 601 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g03002 Rops-Chr6 53006898 53023189 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g03002 270 603 Receptor kinase-like Gene Family AT4G05200 53.372 2.94e-117 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g03002 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g03002 - - ini:109167071 694.115