LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g02999	ATGCATAAAGGTCCCAATGCTTACTATAACTGCACAAAGAACAGCACTTTTGCTACCAATAGCGCCTACCGTTCCAACGTCAAAACACTCCTAGATTGGCTGTCCTCCAATGGCAATAGCAATGCCAGATTCTACAACACTACAGTTGCTAGCAAAAACACTGCGGACACAGTCTATGGTCTCTTCTATTGTACAAGAGACATCGACCCAAAAAGCTGCCAAGTGTGCGTGATAGAAGCAGCCAAACTCATATTATCACTGTGCACCATGGCAAAAGAAGCCATCATGTGGTACAAAATATGCTGCATTCGCTATTCTGATCGTCGTATCTTTTCCACCATGGATGAAAGTCCTAAACTTACCTTTATGAACGATCATGACTATGTGGGTGAGGTTGGGCGCTTCAACAATATTTTATGGGATATGTTGATCGATTTGAGAACTGGGGCAGCAAATGCTTCTGCTAAATATGCTGACAGGTCAGTGAACATCACAGACAACCAAAAGATATATGGCTCTGCTTGGTGCCTCCCATACCTATCCACGGAGAACTGCAGCTGGTGTCTTAGCGATGCCATAGCAGAAGTTCGAGACAGTTGCTGCAGAGGAAAAGCCGGAGGCTCAATATTATATCCCAGTTGTGGTGTTAGATATGAATTATATCCATTCCACAAGGCACATGACACAGCTGCTTTGACGGCGGCGCCACCACTACCCACCCGTCCTCCCCCTTTGGCTCCACCAGTTGGGAATGACATGACTACTTTGGAGTCCTTGCAATTCGAATTAGCCAAAATTGAAGCTGCAACAAACAGATTTACTACAGAAAATAGGATAGGCAAAGGTGGATTTGGAGAAGTCTACAAGGGTATTCTTTCAGATGGACAAGAAATTGCAGTGAAAAGGCTTACAAGAAGCTCTGGGCAAGGTGCAGTGGAGTTTAAAAATGAGGTTCAAGTTATAGCTAAACTTCAACACAGAAATCTAGTGAGGTTACTGGGATTTTGTTTGGAAGGTGAAGAAAAGATACTTATCTATGAGTATGTGCCAAACAAGAGTCTTGATTACTTTTTATTTGATCCCCGGAAGCAAAAACTATTACCTTGGTCTCAACGTCACAAGATCATTAAAGGAATTGCCCGAGGAATTCTTTATCTCCATGAAGATTCTCGCCTCAAAATAATCCATCGTGATCTGAAACCTAGCAATGTTTTGTTAGATAGTAACATGAATCCAAAAATCTCAGATTTTGGCTTGGCCAAAATCGTTGCTGCAGATCAAAATGAAGAAAGTACATGCAGAATTGTTGGGACATATGGTTATATGTCTCCAGAATATGCAATGCATGGACAGTTCTCTGTAAAGTCTGATGTGTTTAGTTTTGGAGTCATGGTTCTAGAGATTATTAGTGGAAAGAGGAAAGGCTTTTCTTCTGAATCAGAGTGTGTTGATGACATCAGGAGACATGCTTGGACAAAATGGACAGAGCAAACACCACTGGAACTATTGGATTCTAACATAGAAGGACCTTATTCCCGAGAAGAAGTCATCAGATGCATACACATTGGTTTGTTGTGTGTTCAGGAAGATCCGGATGACAGACCTACAATGGCAACAATTGTATTCTACCTCAACAGCCCTTCAATCAATCTGCCATCTCCTCATGAACCACCATATTTTATGCGTAGTAAAATAGAAGAAAGCATGGCGACCAGCATGGAATTGGATAATATCAGTGATTCCGTCAACGGAATTACTATAAGTAAATTCTATCCTCGATAA	1782	0.4164	MHKGPNAYYNCTKNSTFATNSAYRSNVKTLLDWLSSNGNSNARFYNTTVASKNTADTVYGLFYCTRDIDPKSCQVCVIEAAKLILSLCTMAKEAIMWYKICCIRYSDRRIFSTMDESPKLTFMNDHDYVGEVGRFNNILWDMLIDLRTGAANASAKYADRSVNITDNQKIYGSAWCLPYLSTENCSWCLSDAIAEVRDSCCRGKAGGSILYPSCGVRYELYPFHKAHDTAALTAAPPLPTRPPPLAPPVGNDMTTLESLQFELAKIEAATNRFTTENRIGKGGFGEVYKGILSDGQEIAVKRLTRSSGQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEGEEKILIYEYVPNKSLDYFLFDPRKQKLLPWSQRHKIIKGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGLAKIVAADQNEESTCRIVGTYGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKGFSSESECVDDIRRHAWTKWTEQTPLELLDSNIEGPYSREEVIRCIHIGLLCVQEDPDDRPTMATIVFYLNSPSINLPSPHEPPYFMRSKIEESMATSMELDNISDSVNGITISKFYPR*	594

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g02999	593	ProSiteProfiles	Gnk2-homologous domain profile.	116	223	IPR002902	-
	Rops6g02999	593	SMART	serkin_6	273	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops6g02999	593	ProSitePatterns	Protein kinases ATP-binding region signature.	279	301	IPR017441	GO:0005524
	Rops6g02999	593	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	242	348	-	-
	Rops6g02999	593	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	394	406	IPR008271	GO:0004672\|GO:0006468
	Rops6g02999	593	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	18	587	-	-
	Rops6g02999	593	SUPERFAMILY	Protein kinase-like (PK-like)	259	567	IPR011009	-
	Rops6g02999	593	Pfam	Protein kinase domain	274	540	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops6g02999	593	Pfam	Salt stress response/antifungal	133	221	IPR002902	-
	Rops6g02999	593	Pfam	Salt stress response/antifungal	11	107	IPR002902	-
	Rops6g02999	593	Gene3D	-	5	109	IPR038408	-
	Rops6g02999	593	Gene3D	-	120	223	IPR038408	-
	Rops6g02999	593	CDD	STKc_IRAK	279	545	-	-
	Rops6g02999	593	Gene3D	Transferase(Phosphotransferase) domain 1	349	550	-	-
	Rops6g02999	593	ProSiteProfiles	Gnk2-homologous domain profile.	5	110	IPR002902	-
	Rops6g02999	593	ProSiteProfiles	Protein kinase domain profile.	273	549	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops6g02999	593	FunFam	cysteine-rich receptor-like protein kinase 10	349	551	-	-
	Rops6g02999	593	Gene3D	Phosphorylase Kinase; domain 1	249	348	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g02999	Rops-Chr6	52970106	52974017	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g02999	8	563	Receptor kinase-like Gene Family	AT4G05200	45.395	0.0	540

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Rops6g02999		Pkinase	8.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g02999	-		-	gmx:100793219	893.264