Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02998 ATGGGTTCCTTCCACGTGTTCCTTGTACTTCCAGCTTTCTTTTCCCTCTTCGTTCATTGCTCTTCCTCTCCCATCATCCAAGCTGCTATGCCGAAAGGTCCCCGTGCTGTCTATAACTGCACAAGGAACAGCACTTTTGCTACCTATAGCGCTTACCATTCGAACATCAAAACACTCCTAGATTGGCTCTCCTCCAATGGAACTAGCAATGCTAGATTCTACAACACTACAGTTGCTAGCAAAAACACAGTAGACACTGTGTATGGTCTTTTCTTTTGTATAAGAGACATCAACCCAAAAGCCTGCCAAGTGTGCGTGACAGAAGCAGCCAAACTCATATCATCGCTGTGCACCATGGCAAAAGAAGCAATCATTTGGACCCAATCATGCTTTGTGCACTATTCTGATCGTCATTTGTTTTCCACCGTGGAGGAAAGTCCCAAAATTTCCTATATGAATTATCAGGATTATGTGGGTGAGGTTGAGCGCTTCAACAATATTTTAAGGGATATGTTGAAAGATCTGAGAACTGAAGCAGCAAATGCTTCTACCAAAGCGGCTGACAAGTCAGTGAAAATCACAGACGAACAAAAGTTGTATGGCTCCGCTTGGTGCCTCCCATACCTATCCTCGGAGAACTGCAGCTGGTGTCTTAGTGATGCCATAGAAGAAGTTCCAACCGGTTGCTGCAGAGCAAAATCTGGAGGCGATGTAGTATATCCCAGTTGTGGTGTTAGATTCGAATTATATCCATTCCGCAAGGCACACTATGCAGTTGCCCCCACAAATTCTCGCCCTTCGGCTCCACCAGGAAAAGGAAAACGGAAGTCACTGACAATAATTGAGATCGTTGTTCCAACTGTTGTTTCACTGGTTCTTTTAGCCTTGGGCTTTGGTTGTTTTCTATACAGTAAAGAGAGAAAGAATAGACATGATATTCTCAAAGAAAACTTTGGGAATGATGATATTAGCACTTTGGAGTCCTTGCAATTGGAATTAGCCAAAATTGAAGCTGCAACAGACAGATTTGCTACAGAAAATAGGATTGGTGAAGGCGGATTTGGAGAAGTCTATAAGGGTATTCTTTCTGATGGACAAGAAATTGCTGTGAAGAGGCTCACAAGAAGCTCCAGGCAAGGTGCAGTAGAGTTTAAAAATGAGGTTCAAGTTATAGCCAAACTTCAACACAGAAATCTAGTGAGGTTACTAGGATTTTGTTTGGAAGGTGAAGAAAAGATACTTATCTATGAGTATGTGCCAAACAAGAGCCTTGATTACTTTTTATTTGATCCCCAACGGCAAAAACTATTACCTTGGTCTCAACGTCACAAGATAATCAAAGGAATTGCCCGAGGAATTCTTTATCTCCATGAAGATTCTCGTCTCAAAATAATCCATCGTGATCTGAAACCTAGCAATGTTTTGTTAGACAGTAATATGAATCCAAAAATCTCAGATTTTGGCATAGCCAAAATCGTTGCTGCAGATAAAAATGAAGAAAGTACAGGCAGAATTGTTGGGACATATGGTTATATGTCTCCAGAGTATGCAATGCATGGACACTTTTCTGTGAAGTCCGATGTGTTTAGTTTTGGAGTCATGGTTCTAGAGATTATCAGTGGAAAGAGGAAAGGCTTTTCTTCTAAATCAGAGTGTGTTGATGACATCCGGAGACATGCTTGGACAAAATGGACAGACCAAACGCCACTGGAACTATTGGATCCTAGCATAGAAGGACTTTATTCCGAAGAAGAAGTCATCAGATGCATGCACATTGGTTTGTTATGTGTTCAGGAAGATCCAAATGATAGACCTACAATGGCAACAATTGTGTTCCACCTCAACAGCCCTTCAATCAACTTGCCATCCCCTCACGAGCCACCATATTTTAGTCATTTTAATCGTGGTAGAATGGAAGAAAGCATGGTGACCAACAAGAAATTGGATAATATTGGTGATTCCATCAACGGAATTACTCTATCTAATTCCTTCCCTCGTTAA 2001 0.4143 MGSFHVFLVLPAFFSLFVHCSSSPIIQAAMPKGPRAVYNCTRNSTFATYSAYHSNIKTLLDWLSSNGTSNARFYNTTVASKNTVDTVYGLFFCIRDINPKACQVCVTEAAKLISSLCTMAKEAIIWTQSCFVHYSDRHLFSTVEESPKISYMNYQDYVGEVERFNNILRDMLKDLRTEAANASTKAADKSVKITDEQKLYGSAWCLPYLSSENCSWCLSDAIEEVPTGCCRAKSGGDVVYPSCGVRFELYPFRKAHYAVAPTNSRPSAPPGKGKRKSLTIIEIVVPTVVSLVLLALGFGCFLYSKERKNRHDILKENFGNDDISTLESLQLELAKIEAATDRFATENRIGEGGFGEVYKGILSDGQEIAVKRLTRSSRQGAVEFKNEVQVIAKLQHRNLVRLLGFCLEGEEKILIYEYVPNKSLDYFLFDPQRQKLLPWSQRHKIIKGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGIAKIVAADKNEESTGRIVGTYGYMSPEYAMHGHFSVKSDVFSFGVMVLEIISGKRKGFSSKSECVDDIRRHAWTKWTDQTPLELLDPSIEGLYSEEEVIRCMHIGLLCVQEDPNDRPTMATIVFHLNSPSINLPSPHEPPYFSHFNRGRMEESMVTNKKLDNIGDSINGITLSNSFPR* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02998 666 SUPERFAMILY Protein kinase-like (PK-like) 332 630 IPR011009 -
Rops6g02998 666 Gene3D Transferase(Phosphotransferase) domain 1 419 620 - -
Rops6g02998 666 Pfam Salt stress response/antifungal 40 136 IPR002902 -
Rops6g02998 666 Pfam Salt stress response/antifungal 159 250 IPR002902 -
Rops6g02998 666 Gene3D - 34 138 IPR038408 -
Rops6g02998 666 Gene3D - 148 252 IPR038408 -
Rops6g02998 666 Coils Coil 326 346 - -
Rops6g02998 666 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Rops6g02998 666 Pfam Protein kinase domain 344 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02998 666 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Rops6g02998 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Rops6g02998 666 Gene3D Phosphorylase Kinase; domain 1 304 418 - -
Rops6g02998 666 CDD STKc_IRAK 349 615 - -
Rops6g02998 666 FunFam cysteine-rich receptor-like protein kinase 10 419 621 - -
Rops6g02998 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 647 - -
Rops6g02998 666 SMART serkin_6 343 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02998 666 Coils Coil 165 185 - -
Rops6g02998 666 ProSiteProfiles Protein kinase domain profile. 343 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02998 666 ProSiteProfiles Gnk2-homologous domain profile. 145 252 IPR002902 -
Rops6g02998 666 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 303 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02998 Rops-Chr6 52964710 52968185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02998 12 630 Receptor kinase-like Gene Family AT4G05200 44.849 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g02998 Pkinase 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02998 - - gmx:100793219 994.186