Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02997 ATGTCGCCTTTTAGCAAACCAATATTGAAAATTGGAAAAAGAAAACATTCAATATCAGTAATCGTTGTGGTTGTCTCAGTTGTTGTGTCTGTGGTGCTTTTATCTTTGGGTTGCGGCTGTTTACTAAGGAGGAGACGGAGGAAGAATCAAGAGACTATTCTTAAAGAAAGCTTTGGGAATGAAGTTACCAGTTTGGAATCCTTGTGGTTTGATTTTGGAGAAATAGAAACTGCAACAAACAAGTTTGCTAAAGAAAATTTGATTGGCAAAGGTGGATTTGGAGAAGTTTATAAGGGTATACTTTCCAATGGGCAAGAGATAGCTGTAAAGAGGCTCTTGGGAAGCTCCGGGCAAGGTGCAATAGAATTTAAGAATGAGGTTCTTGTTATAGCTCAGCTTCAACACAAAAATCTGGTGAAATTACTAGGATTTTGTCTGGATGGGCAAGAAAAGATACTCATATATGAATATGTACCCAACAAGAGTCTTGATTACATTTTATCTGATCCCCAAAAGAGAAGACAATTAAATTGGTTTGAACGGCACAAGATTATTGGAGGAATTGCTAGAGGAATTCTTTACCTCCATGAGGACTCTCGCCTTAAGATTATACATCGCGATCTAAAACCTGGTAATGTTTTGTTAGACAGTAACATGAACCCAAAAATCTCAGATTTTGGAATGGCAAGAATTGTTGCTCCGGGTAATATTGAAGAAAACACGCATAGAATTGTTGGGACTTTCGGGTACATGTCTCCAGAGTATGCAATGCATGGCCAGTTCTCAGTGAAATCTGATGTGTTTAGTTTTGGAGTCATGGTCCTAGAGATAATCAGTGGAAAAAGGAAAGGTTCTTCTTCTGAATCAGATCGTGTTGAGGACATACGGAAATATGCTTGGATGAAATGGAGAAACCAAATGCCATTGGAACTATTGGATCCTCTGTTGGAAGCATCATGTTCTCAAAACGAAGTCATTAGATGCATCCATGTTGGTTTATTATGTGTACAGGAAGACCCCAATGATAGACCCACAATGGCAAACGTTGTTTCTTTCCTTAATAATCCTTCAGTCCATTCGCCATTACCCACTGAACCAACATTTTTCATGAATAGAAGAATGGAGGACATTATGGCCAGAAAGGGATCTGACTCTAACAGTGATTCAAACTATGAATCTATTAATGGAATGACAATGAGTCAATTTTACCCTCGATAG 1218 0.3834 MSPFSKPILKIGKRKHSISVIVVVVSVVVSVVLLSLGCGCLLRRRRRKNQETILKESFGNEVTSLESLWFDFGEIETATNKFAKENLIGKGGFGEVYKGILSNGQEIAVKRLLGSSGQGAIEFKNEVLVIAQLQHKNLVKLLGFCLDGQEKILIYEYVPNKSLDYILSDPQKRRQLNWFERHKIIGGIARGILYLHEDSRLKIIHRDLKPGNVLLDSNMNPKISDFGMARIVAPGNIEENTHRIVGTFGYMSPEYAMHGQFSVKSDVFSFGVMVLEIISGKRKGSSSESDRVEDIRKYAWMKWRNQMPLELLDPLLEASCSQNEVIRCIHVGLLCVQEDPNDRPTMANVVSFLNNPSVHSPLPTEPTFFMNRRMEDIMARKGSDSNSDSNYESINGMTMSQFYPR* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02997 405 Gene3D Transferase(Phosphotransferase) domain 1 158 360 - -
Rops6g02997 405 ProSiteProfiles Protein kinase domain profile. 82 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02997 405 Gene3D Phosphorylase Kinase; domain 1 42 157 - -
Rops6g02997 405 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 43 157 - -
Rops6g02997 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Rops6g02997 405 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 401 - -
Rops6g02997 405 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Rops6g02997 405 MobiDBLite consensus disorder prediction 383 405 - -
Rops6g02997 405 Pfam Protein kinase domain 83 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02997 405 SMART serkin_6 82 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02997 405 SUPERFAMILY Protein kinase-like (PK-like) 67 379 IPR011009 -
Rops6g02997 405 CDD STKc_IRAK 88 355 - -
Rops6g02997 405 MobiDBLite consensus disorder prediction 380 405 - -
Rops6g02997 405 FunFam cysteine-rich receptor-like protein kinase 10 158 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02997 Rops-Chr6 52947174 52950849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02997 40 405 Receptor kinase-like Gene Family AT4G23140 53.495 4.49e-146 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops6g02997 Pkinase 4.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02997 - - tpra:123882552 547.74