Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02992 ATGGTGAAGGGTTCAACCACTTTTGCTATAAAATGCCCTCAATCCCACCGTTGCTATTCGCAGTTTCATTTTAATCAAATCAGATTCATCTCCTCTCGCATTCCTTATCTCTTCAAGATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGAGGTCGAGAGTTCCGATACCATCGACAACGTCAAGGCTAAGATCCAGGATAAGGAAGGAATTCCCCCGGACCAGCAGCGTCTCATCTTCGCAGGAAAGCAACTTGAGGACGGTCGCACCCTCGCCGACTACAACATTCAGAAGGAATCAACCCTTCACCTCGTCCTTCGTCTTCGCGGTGGCATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTCGAGAGTTCCGACACCATTGACAACGTAAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAGAGGCTTATCTTCGCAGGAAAGCAGCTCGAGGATGGCCGTACCCTCGCCGACTACAACATCCAGAAGGAGTCAACCCTCCACCTCGTCCTCCGTCTTCGTGGTGGCATGCAGATCTTCGTTAAGACCCTCACAGGCAAGACTATTACGCTAGAGGTTGAAAGCTCTGACACAATCGATAACGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCACCAGACCAGCAGAGGCTGATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGCACTTTGGCTGACTATAACATCCAGAAGGAGTCGACTCTCCACCTTGTCTTACGTCTTCGTGGTGGTATGCAAATCTTCGTGAAGACTCTTACCGGCAAGACTATTACTCTAGAGGTTGAGAGCTCTGACACAATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAGCAGAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACCCTGGCTGATTACAATATTCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTCAGGGGAGGCATGCAGATTTTTGTGAAGACCTTGACTGGGAAGACCATTACCCTGGAGGTGGAGAGCTCTGACACTATTGACAATGTCAAGGCTAAAATTCAGGACAAGGAAGGTATCCCACCAGACCAGCAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGATTACAATATTCAGAAGGAGTCTACCCTGCACCTTGTGCTGCGTCTTCGTGGGGGATTTTAA 1263 0.5012 MVKGSTTFAIKCPQSHRCYSQFHFNQIRFISSRIPYLFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02992 420 ProSiteProfiles Ubiquitin domain profile. 116 191 IPR000626 GO:0005515
Rops6g02992 420 PANTHER UBIQUITIN 192 269 - -
Rops6g02992 420 ProSiteProfiles Ubiquitin domain profile. 40 115 IPR000626 GO:0005515
Rops6g02992 420 ProSiteProfiles Ubiquitin domain profile. 268 343 IPR000626 GO:0005515
Rops6g02992 420 CDD Ubl_ubiquitin 268 343 - -
Rops6g02992 420 ProSiteProfiles Ubiquitin domain profile. 192 267 IPR000626 GO:0005515
Rops6g02992 420 ProSiteProfiles Ubiquitin domain profile. 344 419 IPR000626 GO:0005515
Rops6g02992 420 ProSitePatterns Ubiquitin domain signature. 142 167 IPR019954 -
Rops6g02992 420 FunFam Polyubiquitin 3 116 191 - -
Rops6g02992 420 CDD Ubl_ubiquitin 116 191 - -
Rops6g02992 420 FunFam Polyubiquitin 3 344 419 - -
Rops6g02992 420 ProSitePatterns Ubiquitin domain signature. 370 395 IPR019954 -
Rops6g02992 420 FunFam Polyubiquitin 3 40 115 - -
Rops6g02992 420 SUPERFAMILY Ubiquitin-like 191 267 IPR029071 -
Rops6g02992 420 SMART ubq_7 40 111 IPR000626 GO:0005515
Rops6g02992 420 SMART ubq_7 116 187 IPR000626 GO:0005515
Rops6g02992 420 SMART ubq_7 192 263 IPR000626 GO:0005515
Rops6g02992 420 SMART ubq_7 268 339 IPR000626 GO:0005515
Rops6g02992 420 SMART ubq_7 344 415 IPR000626 GO:0005515
Rops6g02992 420 FunFam Polyubiquitin 3 192 267 - -
Rops6g02992 420 CDD Ubl_ubiquitin 192 267 - -
Rops6g02992 420 SUPERFAMILY Ubiquitin-like 13 115 IPR029071 -
Rops6g02992 420 ProSitePatterns Ubiquitin domain signature. 66 91 IPR019954 -
Rops6g02992 420 ProSitePatterns Ubiquitin domain signature. 218 243 IPR019954 -
Rops6g02992 420 CDD Ubl_ubiquitin 40 115 - -
Rops6g02992 420 SUPERFAMILY Ubiquitin-like 267 343 IPR029071 -
Rops6g02992 420 ProSitePatterns Ubiquitin domain signature. 294 319 IPR019954 -
Rops6g02992 420 PRINTS Ubiquitin signature 71 91 IPR019956 -
Rops6g02992 420 PRINTS Ubiquitin signature 50 70 IPR019956 -
Rops6g02992 420 PRINTS Ubiquitin signature 92 113 IPR019956 -
Rops6g02992 420 Gene3D - 192 267 - -
Rops6g02992 420 Gene3D - 268 343 - -
Rops6g02992 420 Gene3D - 116 191 - -
Rops6g02992 420 Gene3D - 37 115 - -
Rops6g02992 420 Gene3D - 344 420 - -
Rops6g02992 420 CDD Ubl_ubiquitin 344 419 - -
Rops6g02992 420 SUPERFAMILY Ubiquitin-like 343 419 IPR029071 -
Rops6g02992 420 FunFam Polyubiquitin 3 268 343 - -
Rops6g02992 420 Pfam Ubiquitin family 346 417 IPR000626 GO:0005515
Rops6g02992 420 Pfam Ubiquitin family 194 265 IPR000626 GO:0005515
Rops6g02992 420 Pfam Ubiquitin family 42 113 IPR000626 GO:0005515
Rops6g02992 420 Pfam Ubiquitin family 270 341 IPR000626 GO:0005515
Rops6g02992 420 Pfam Ubiquitin family 118 189 IPR000626 GO:0005515
Rops6g02992 420 SUPERFAMILY Ubiquitin-like 115 191 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02992 Rops-Chr6 52872095 52874090 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02992 344 420 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 5.48e-47 155