Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02986 ATGTCTGTATCTGTGGTTACTTTTGGTACTTGTATGCTTTTAGGGATCCCACTTGAATCAGGGAAGATCTTGTCTGCACTTGCAACATTCTGGATTCTTAAAGGGCCCATTTATAATCTTCCAAAAACAATTTCAATGATAGCACAAACTAAAGTTTCCCTTGACAGGGTTGTATCATTCCTTTGCCTTGATGACTTGTCGTCTGATGTTGTAGAAAAGCTTCCTTGGGGTAGTTCTGTCACAGCAATTGAAGTAGTTGATGGAAACTTTTCTTCGGATTTATCTTCCCCTAATCCTACGTTGCAAAACATAAATCTTAGAGTTTCTCATGGCATGAGGGCTGCAGTTTGTGGTACTGTTGGATCAGGCAAGTCTACCTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGGTATCGGGTATTCTTAAGGTTTGTGGAACCAAGGCCTATGTTGCTCAATCACCATGGATACAAAGCGGCAAGATAGAGGATAATATATTGTTTGGTAGACACATGGATAGGGAAAGGTATGAGAGGGAACTTGAAGCATGTCCCCTGAAGAAGGATCTGAAGATTTTGTCATTTGGTGATCAGACGATTATAGGAAAGCGTGGAATAAATTTAAGTGGTGGACAGAAACAAAGAATACAAATCGCATGTGCTCTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGTTGTGGATGCTCAAACGGGATCTCACCTTTTTAAGGAATGCTTGCTCGGCCTTTTAAGTTCAAAAACAGTAGTTTTTGTCACTCATCAAGTGGAGTTCTTACCTTCTGCTGACCTTATATTGGTAATGAAAGATGGGAAAATTACTCAATGTGGAAAGTATACCAATCTGCTTAACAGTGGGACTGATTTTCTGGAACTTGTTGGTGCACACAGAAAAGCTTTGTGCACACTTGATTCATTGGGTGGAGGGACAATATCTAATGAAACAAGTACCTCGGAACAAGATGTAAACATCTCTGGCACTCATGGTGTTAAAGAAGAAATGACAAACAAAGATGAGCAAAATGGTAAAGCAAACAACAAAGGTGAACCAAAAGGCCAGCTTATTCAAGAAGAAGAAAGAGAGAAAGGTAAAGTTGGGTTTTCAGTCTATTGGAAGTATATCACAACTGCATATGGAGGAGCTCTTGTACCATTCATATTATTGGCTCAGATTCTCTGTCAAGCTCTTGAAATTGGAAGCAACTATTGGATGGCTTGGGCAACTCCTATCTCAGCAGATGTGGAGCCACCAGTTGGAGGAAGTAGTCTATCTGGTTATAAGACAGCTATTGTACTCTTCAATAAAATGCACTTCTGCATTTTTCGTGCCCCAATGTCAGTTTTTGATTCCACTCCAAGTGGGCGAATCCTTAACAGAGCTTCTCCTGACCAAAGTGCAGTGGATACAGACATTCCTTATAAAATTGGGTATTTTGCCTCCGACATACTCCTCAATAAGTCCTACACCAATGTCCAAAGAAACCAGAAAATGAAACATGCTAGAGGATAA 1542 0.3982 MSVSVVTFGTCMLLGIPLESGKILSALATFWILKGPIYNLPKTISMIAQTKVSLDRVVSFLCLDDLSSDVVEKLPWGSSVTAIEVVDGNFSSDLSSPNPTLQNINLRVSHGMRAAVCGTVGSGKSTLLSCVLGEVPKVSGILKVCGTKAYVAQSPWIQSGKIEDNILFGRHMDRERYERELEACPLKKDLKILSFGDQTIIGKRGINLSGGQKQRIQIACALYQDADIYLFDDPFSVVDAQTGSHLFKECLLGLLSSKTVVFVTHQVEFLPSADLILVMKDGKITQCGKYTNLLNSGTDFLELVGAHRKALCTLDSLGGGTISNETSTSEQDVNISGTHGVKEEMTNKDEQNGKANNKGEPKGQLIQEEEREKGKVGFSVYWKYITTAYGGALVPFILLAQILCQALEIGSNYWMAWATPISADVEPPVGGSSLSGYKTAIVLFNKMHFCIFRAPMSVFDSTPSGRILNRASPDQSAVDTDIPYKIGYFASDILLNKSYTNVQRNQKMKHARG* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02986 513 SMART AAA_5 110 283 IPR003593 GO:0016887
Rops6g02986 513 ProSitePatterns ABC transporters family signature. 208 222 IPR017871 GO:0005524|GO:0016887
Rops6g02986 513 CDD ABCC_MRP_domain1 83 283 - -
Rops6g02986 513 Gene3D - 72 313 IPR027417 -
Rops6g02986 513 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 83 306 IPR003439 GO:0005524
Rops6g02986 513 FunFam ABC transporter C family member 5 68 315 - -
Rops6g02986 513 Pfam ABC transporter 101 235 IPR003439 GO:0005524
Rops6g02986 513 SUPERFAMILY ABC transporter transmembrane region 433 494 IPR036640 GO:0005524|GO:0016020
Rops6g02986 513 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 3 491 - -
Rops6g02986 513 MobiDBLite consensus disorder prediction 342 356 - -
Rops6g02986 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 305 IPR027417 -
Rops6g02986 513 MobiDBLite consensus disorder prediction 341 369 - -
Rops6g02986 513 Gene3D ABC transporter type 1, transmembrane domain 1 65 IPR036640 GO:0005524|GO:0016020
Rops6g02986 513 Gene3D ABC transporter type 1, transmembrane domain 356 495 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02986 Rops-Chr6 52838326 52839816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02986 93 299 Calmodulin-binding Proteins AT2G36910 31.718 5.03e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02986 - K05666 gmx:100777836 825.854