Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02983 ATGGCACAACAAGAGCACACTCCAATGGCGCAACAAGAAGACTCACCCTCTGGTCTTCACGCCGTTGACGACTTTTACTTCTCTGCTCTGTTCGATGATGATGAAGAAACTGGCCTCGTTCCCGTGTCTGATGACAAGTATGCTCAAGAGTTACAGTTTCAGGAGACCTTAATGGCCTCTCTCATTATCTCCCAAAACGCGTCGCTTTCGTTGCCGTCTTCGTCATCGTCATCATCACCATCACCCTTCCTCTGCTTAGAAGCATCTTCATCAAACACCATGGAAGTTAGCCTTATCCCCATAATGGAGAAGGTAGAGTTTGTGACTGAAGAAAAAGCAGGTGAATCCTCATTCATCATCTGCGAGATTTGTGCAGAAACGAAAGGGAGGGACGAGATGTTCATGAACCAGAGATGTGACCATTCATTCTGCTCTGACTGTGTCACCAAACAAGTGGCCACAAAGATACAAGACAACATAACGGTTGTTTCATGTCCCGGATTGAACTGCAAGGGTGTGTTGGAGCTTGATGCTTGCAGGTCAATGCTCCCAAAAGACCTTATTGACAGGTGGGATGATGCATTGTGTGAGGCTCTTTTACTTACAGCTCAGAAATTCTATTGCCCCTTTAAGGATTGTTCTGCTATGATGCTGGATGACAATGAAGAAGGGGAAGACATTAGGGAGTCTGAGTGTCCTTTTTGCCACAGGCTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGGTTGGATGTGAGGAATTCCAGACACTCAATGAGGATGAGAGAGGGAGGGGAGATCTCCTTGTCAGAGAGCTTGCTAATGAAAAGAAATGGAGGAGGTGTCCCCAGTGCAAGTTCTATGTTGAAAAGACTGAAGGGTGTTTGCATATCACCTGCAGGTGCCAATTTCAGTTTTGCTATGCTTGTGGAGAACAATGGACTTCTACTCATGGTGGCTGCCAAAGAAATTAG 978 0.4632 MAQQEHTPMAQQEDSPSGLHAVDDFYFSALFDDDEETGLVPVSDDKYAQELQFQETLMASLIISQNASLSLPSSSSSSSPSPFLCLEASSSNTMEVSLIPIMEKVEFVTEEKAGESSFIICEICAETKGRDEMFMNQRCDHSFCSDCVTKQVATKIQDNITVVSCPGLNCKGVLELDACRSMLPKDLIDRWDDALCEALLLTAQKFYCPFKDCSAMMLDDNEEGEDIRESECPFCHRLFCARCHVPWHPGVGCEEFQTLNEDERGRGDLLVRELANEKKWRRCPQCKFYVEKTEGCLHITCRCQFQFCYACGEQWTSTHGGCQRN* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02983 325 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 315 IPR031127 GO:0004842|GO:0016567
Rops6g02983 325 FunFam RBR-type E3 ubiquitin transferase 255 325 - -
Rops6g02983 325 Gene3D - 251 325 - -
Rops6g02983 325 FunFam RBR-type E3 ubiquitin transferase 116 202 - -
Rops6g02983 325 SUPERFAMILY RING/U-box 115 198 - -
Rops6g02983 325 SUPERFAMILY RING/U-box 192 257 - -
Rops6g02983 325 ProSiteProfiles TRIAD supradomain profile. 117 325 IPR044066 -
Rops6g02983 325 ProSiteProfiles Zinc finger RING-type profile. 121 166 IPR001841 -
Rops6g02983 325 CDD Rcat_RBR_unk 279 315 - -
Rops6g02983 325 ProSitePatterns Zinc finger RING-type signature. 139 148 IPR017907 -
Rops6g02983 325 SMART ibrneu5 189 253 IPR002867 GO:0008270
Rops6g02983 325 SMART ibrneu5 263 322 IPR002867 GO:0008270
Rops6g02983 325 CDD BRcat_RBR_unk 203 256 - -
Rops6g02983 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 201 IPR013083 -
Rops6g02983 325 Pfam IBR domain, a half RING-finger domain 197 253 IPR002867 GO:0008270
Rops6g02983 325 Pfam IBR domain, a half RING-finger domain 273 322 IPR002867 GO:0008270
Rops6g02983 325 SUPERFAMILY RING/U-box 264 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02983 Rops-Chr6 52822928 52828357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02983 114 312 C3H Transcription Factor Family AT2G19610 28.502 1.52e-21 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02983 K11975 - pop:18094363 402.905