Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02982 ATGGCGCAACAAGAAGACTCACCCTCTGGTCTTCACGCCGTTGACGACTTTTACTTCTCTGCTCTGTTCGATGATGATGAAGAAACTGGCCTCGTTCCCGTGTCTGATGACAAGTATGCTCAAGAGTTACAGTTTCAGGAGATCTTAATGGCCTCTCTCATTATCTCCCAAAACGCGTCGTTTTCGTTGACGTCTTCGTCATCATCACCACCACCACCACCCTTCCTCAGCTTAGAAGCATCTTCATCAAAAACCATAGAAGTTAGCCTTATCCCCATGAAGGAGAAGGTAGAGTTTGTGACTGAAGAAGAAGCAGGTGAATCCTCACTCATCATCTGCAAGCTTTGTGCAGAAACAAAAGGGAGGGACGAGATGTTCATGAACCAGAGATGTGACCATTCATTCTGCTCTGACTGTGTCACCAAACAAGTGGCCACAAAGATACAAGACAACATAACGGTTGTTTCATGTCCTGGTGGTTTGAACTGCAAGGGTGTGTTGGAGCTTGATGCTTGCAGGTCAATTCTCCCAAAAGACCTTATTGACAGGTGGGATGATGCATTGTGTGAGGCTCTTTTACTTACAGCTCAGAAATTCTACTGCCCCTTCGGGGATTGTTCTGCTATGATGCTGGATGACAATGAAGAAGGGGAAGACATTAGGGAGTCTGAGTGCCCTTTTTGCCACAGGCTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATCCTGGGGTTGGATGTGAGGAATTCCAGACACTCAATGAGGATGAGAGAGGGAGGGAAGATCTCCTTGTCAGAGAGCTTGCTAATGAAAAGAAATGGAGCAGGTGTCCCCAGTGCAAGTTCTATGTTGAAAAGACTGAAGGGTGTTTGCATATCACCTGCAGGTGCCAATTTCAGTTTTGCTATGCTTGTGGAGAACAATGGACTTCTACTCATGGTGGCTGCCAAAGAAATTAG 957 0.4639 MAQQEDSPSGLHAVDDFYFSALFDDDEETGLVPVSDDKYAQELQFQEILMASLIISQNASFSLTSSSSSPPPPPFLSLEASSSKTIEVSLIPMKEKVEFVTEEEAGESSLIICKLCAETKGRDEMFMNQRCDHSFCSDCVTKQVATKIQDNITVVSCPGGLNCKGVLELDACRSILPKDLIDRWDDALCEALLLTAQKFYCPFGDCSAMMLDDNEEGEDIRESECPFCHRLFCARCHVPWHPGVGCEEFQTLNEDERGREDLLVRELANEKKWSRCPQCKFYVEKTEGCLHITCRCQFQFCYACGEQWTSTHGGCQRN* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02982 318 SUPERFAMILY RING/U-box 185 250 - -
Rops6g02982 318 CDD BRcat_RBR_unk 196 249 - -
Rops6g02982 318 SUPERFAMILY RING/U-box 257 316 - -
Rops6g02982 318 ProSiteProfiles Zinc finger RING-type profile. 113 158 IPR001841 -
Rops6g02982 318 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 71 308 IPR031127 GO:0004842|GO:0016567
Rops6g02982 318 ProSiteProfiles TRIAD supradomain profile. 109 318 IPR044066 -
Rops6g02982 318 FunFam RBR-type E3 ubiquitin transferase 248 318 - -
Rops6g02982 318 ProSitePatterns Zinc finger RING-type signature. 131 140 IPR017907 -
Rops6g02982 318 Gene3D - 242 318 - -
Rops6g02982 318 Pfam IBR domain, a half RING-finger domain 190 246 IPR002867 GO:0008270
Rops6g02982 318 Pfam IBR domain, a half RING-finger domain 265 315 IPR002867 GO:0008270
Rops6g02982 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 192 IPR013083 -
Rops6g02982 318 SMART ibrneu5 256 315 IPR002867 GO:0008270
Rops6g02982 318 SMART ibrneu5 182 246 IPR002867 GO:0008270
Rops6g02982 318 SUPERFAMILY RING/U-box 107 191 - -
Rops6g02982 318 FunFam RBR-type E3 ubiquitin transferase 108 195 - -
Rops6g02982 318 CDD Rcat_RBR_unk 272 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02982 Rops-Chr6 52821879 52828024 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02982 80 305 C3H Transcription Factor Family AT2G19610 27.848 7.17e-20 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02982 K11975 - pop:18094363 392.504