LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g02981	ATGGCGCAACAAGAAGACTCACCGTTTGGTCTTCACGCCGTTGACGACTTTTACTGCTCTGCTCTGTTCGATGATGATGATGAAACTGGCCTCGTTCCTGCGTCTGATGACAAGTATGCTCAAGAGTTACAGTTTCAGGAGACCCTAATGGCCTCTCTCATTACCTCCCAAAACGCGTCGTTTTCGTTGCCGTCTTCGTCATCATCACCACCACCATCACCCTTCCTCTGCTTCGAAGCATCTTCATCAAAAACCATTGAAGTTAGCCTTACCCCCATGAAGGAGAAGGTACAGTTGGTGACTGAAGAAGAAGCTGGCCATGTCTCCCTTTCTGATGACAAATATGCTCAGGAGTTGCAGTTCCAGGAAGCCCTCGTCACTTCCCAAAACGCGTCGTCATCTTCTCCATCGTCAATAACACCACCACCATCACCAAAAGCAGTTGAAGTTAGCCTTACCCCCAAGAAAAAGAGGAAGGTAGAAGAAGCCGGTGAATCCTCACTCATCATCTGCGAGATTTGTGCAGAAACGAAAGGGAGGGACGAGATGTTCACGAACCAGAGATGTGACCATTCATTCTGCTCTGACTGTGTCACCAAACAAGTGGCCACAAAGATACAAGACAACATAACGGTTGTTTCATGTCCCGGATTGAACTGCAAGGGTGTGTTGGAGCTTGATGCTTGCAGGTCAATGCTCCCAAAAGACCTTATTGACAGGTGGGATGATGCATTGTGTGAGGCTCGTTTACTTACAGCTCAGAAATTCTATTGCCCCTTTAAGGATTGTTCTGCTATGATGCTGGATGACAATGAAGAAGGGGAAGACATTAGGGAGTCTGAGTGCCCTTTTTGCCATAGGCTCTTCTGTGCAAGGTGTCATGTTCCTTGGCATCCAGGGGTTGGATGTGAGGAATTCCAGACACTCAATGAGGATGAGAGAGGGAGGGGAGATCTCCTTGTTAGAAAACTTGCTAATGAAAAGGAATGGAGCAGGTGTCCCCAGTGCAAGTTCTATGTTGAAAAGACTGGAGGGTGTTTGCATATCACCTGCAGGTGTCAATTTCAATTTTGCTATGCTTGTGGAGAACAGTGGACTTCTACTCATGGTGGCTGCCAAAGAAATTAG	1128	0.4716	MAQQEDSPFGLHAVDDFYCSALFDDDDETGLVPASDDKYAQELQFQETLMASLITSQNASFSLPSSSSSPPPSPFLCFEASSSKTIEVSLTPMKEKVQLVTEEEAGHVSLSDDKYAQELQFQEALVTSQNASSSSPSSITPPPSPKAVEVSLTPKKKRKVEEAGESSLIICEICAETKGRDEMFTNQRCDHSFCSDCVTKQVATKIQDNITVVSCPGLNCKGVLELDACRSMLPKDLIDRWDDALCEARLLTAQKFYCPFKDCSAMMLDDNEEGEDIRESECPFCHRLFCARCHVPWHPGVGCEEFQTLNEDERGRGDLLVRKLANEKEWSRCPQCKFYVEKTGGCLHITCRCQFQFCYACGEQWTSTHGGCQRN*	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g02981	375	ProSiteProfiles	Zinc finger RING-type profile.	171	216	IPR001841	-
	Rops6g02981	375	ProSitePatterns	Zinc finger RING-type signature.	189	198	IPR017907	-
	Rops6g02981	375	CDD	BRcat_RBR_unk	253	306	-	-
	Rops6g02981	375	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	164	253	IPR013083	-
	Rops6g02981	375	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	83	365	IPR031127	GO:0004842\|GO:0016567
	Rops6g02981	375	MobiDBLite	consensus disorder prediction	126	153	-	-
	Rops6g02981	375	SMART	ibrneu5	313	372	IPR002867	GO:0008270
	Rops6g02981	375	SMART	ibrneu5	239	303	IPR002867	GO:0008270
	Rops6g02981	375	FunFam	RBR-type E3 ubiquitin transferase	305	375	-	-
	Rops6g02981	375	CDD	Rcat_RBR_unk	330	365	-	-
	Rops6g02981	375	Pfam	IBR domain, a half RING-finger domain	252	303	IPR002867	GO:0008270
	Rops6g02981	375	Pfam	IBR domain, a half RING-finger domain	322	372	IPR002867	GO:0008270
	Rops6g02981	375	SUPERFAMILY	RING/U-box	165	248	-	-
	Rops6g02981	375	ProSiteProfiles	TRIAD supradomain profile.	167	375	IPR044066	-
	Rops6g02981	375	Gene3D	-	300	375	-	-
	Rops6g02981	375	FunFam	RBR-type E3 ubiquitin transferase	166	252	-	-
	Rops6g02981	375	SUPERFAMILY	RING/U-box	314	373	-	-
	Rops6g02981	375	SUPERFAMILY	RING/U-box	243	307	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g02981	Rops-Chr6	52793997	52795529	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g02981	164	362	C3H Transcription Factor Family	AT2G19610	28.986	3.69e-21	92.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g02981	K11975		-	qsu:112001859	377.867