Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02979 ATGGCGCAACGAGAAAACTCAACCTTTGGGCCTCACGTCGTTGACGACTTTTACTTCTCTTCTCTGTTGGACGGTGATAAAGAAGCTGGCGATGTTTTCCTTTCTGACGACAAGTATGCTCAGGAGTTGCAGTTACAGGAAGCCCTCATGGCCTCTCTCATCACTTCTCAAAACGTGGCGTCGTCTTCTTCATCATCAATAACACCACCACCATCACCCTTTGTCTGCTTAGCATCTTCATCAAAAGCCGTTGAAGTTAACCTTACCCTTACTCCCATGAAGAAGAAGAGGAAGGTAGAAGAAGCATGTGAATCCTCGGTCATTATATGCGAAATCTGTGCAGAAACGAAAAGAAGGGACGAGATGTTCAGGAACCAGAGATGTGATCATTCCTTCTGCTCTGACTGTATCACCAAACAAGTGGCCACAAAGATACAAGACAGGATAGCGGTTGTTTTGTGTCCTGGTTTGAACTGCAAGGGTGTGTTGGAGCTTGATGCTTGCAGGGCAATTCTCCCAAAAGACCTTATTGAAAGATGGGATTATGCATTGTGTGAGGCTCTTTTACTTACAGCTAAGAACTTCTATTGTCCCTTTAAGGACTGTTCTGCTATGTTGTTGGATGACAATGAAGAAGGGGAAGAAGACATGAGGGAGTCTGAGTGTCCTTTTTGCCATAGGCTCTTTTGTGCAAAGTGTCATGTTCCTTGGCATTCTGAGATTACCTGTCAGGAGTTCCAGACACTCAATGAGGATGAGAGAGGGAGAGAAGATCTCCTTGTTAGAAAACTTGCTAATGAGAAGAAATGGAGCAGGTGTCCCAAATGCAAGTTCTTTGTTGAAAAGACTGATGGGTGTTTGCATATGACCTGCAGGTCAGTTCTCTTGTACTGCTAA 897 0.4448 MAQRENSTFGPHVVDDFYFSSLLDGDKEAGDVFLSDDKYAQELQLQEALMASLITSQNVASSSSSSITPPPSPFVCLASSSKAVEVNLTLTPMKKKRKVEEACESSVIICEICAETKRRDEMFRNQRCDHSFCSDCITKQVATKIQDRIAVVLCPGLNCKGVLELDACRAILPKDLIERWDYALCEALLLTAKNFYCPFKDCSAMLLDDNEEGEEDMRESECPFCHRLFCAKCHVPWHSEITCQEFQTLNEDERGREDLLVRKLANEKKWSRCPKCKFFVEKTDGCLHMTCRSVLLYC* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02979 298 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 69 298 IPR031127 GO:0004842|GO:0016567
Rops6g02979 298 Pfam IBR domain, a half RING-finger domain 189 243 IPR002867 GO:0008270
Rops6g02979 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 189 IPR013083 -
Rops6g02979 298 SUPERFAMILY RING/U-box 105 187 - -
Rops6g02979 298 ProSitePatterns Zinc finger RING-type signature. 128 137 IPR017907 -
Rops6g02979 298 SUPERFAMILY RING/U-box 180 247 - -
Rops6g02979 298 ProSiteProfiles TRIAD supradomain profile. 106 298 IPR044066 -
Rops6g02979 298 FunFam RBR-type E3 ubiquitin transferase 105 191 - -
Rops6g02979 298 CDD BRcat_RBR_unk 195 246 - -
Rops6g02979 298 Pfam Zinc finger, C3HC4 type (RING finger) 110 143 IPR018957 GO:0046872
Rops6g02979 298 ProSiteProfiles Zinc finger RING-type profile. 110 155 IPR001841 -
Rops6g02979 298 SMART ibrneu5 178 243 IPR002867 GO:0008270
Rops6g02979 298 Gene3D - 240 295 - -
Rops6g02979 298 SUPERFAMILY RING/U-box 254 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02979 Rops-Chr6 52768338 52769234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02979 110 292 C3H Transcription Factor Family AT2G19610 29.630 1.94e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02979 K11975 - qsu:112001859 343.199